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BGD: A Database of Bat Genomes
Bats account for ~20% of mammalian species, and are the only mammals with true powered flight. For the sake of their specialized phenotypic traits, many researches have been devoted to examine the evolution of bats. Until now, some whole genome sequences of bats have been assembled and annotated, ho...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482021/ https://www.ncbi.nlm.nih.gov/pubmed/26110276 http://dx.doi.org/10.1371/journal.pone.0131296 |
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author | Fang, Jianfei Wang, Xuan Mu, Shuo Zhang, Shuyi Dong, Dong |
author_facet | Fang, Jianfei Wang, Xuan Mu, Shuo Zhang, Shuyi Dong, Dong |
author_sort | Fang, Jianfei |
collection | PubMed |
description | Bats account for ~20% of mammalian species, and are the only mammals with true powered flight. For the sake of their specialized phenotypic traits, many researches have been devoted to examine the evolution of bats. Until now, some whole genome sequences of bats have been assembled and annotated, however, a uniform resource for the annotated bat genomes is still unavailable. To make the extensive data associated with the bat genomes accessible to the general biological communities, we established a Bat Genome Database (BGD). BGD is an open-access, web-available portal that integrates available data of bat genomes and genes. It hosts data from six bat species, including two megabats and four microbats. Users can query the gene annotations using efficient searching engine, and it offers browsable tracks of bat genomes. Furthermore, an easy-to-use phylogenetic analysis tool was also provided to facilitate online phylogeny study of genes. To the best of our knowledge, BGD is the first database of bat genomes. It will extend our understanding of the bat evolution and be advantageous to the bat sequences analysis. BGD is freely available at: http://donglab.ecnu.edu.cn/databases/BatGenome/. |
format | Online Article Text |
id | pubmed-4482021 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44820212015-07-01 BGD: A Database of Bat Genomes Fang, Jianfei Wang, Xuan Mu, Shuo Zhang, Shuyi Dong, Dong PLoS One Research Article Bats account for ~20% of mammalian species, and are the only mammals with true powered flight. For the sake of their specialized phenotypic traits, many researches have been devoted to examine the evolution of bats. Until now, some whole genome sequences of bats have been assembled and annotated, however, a uniform resource for the annotated bat genomes is still unavailable. To make the extensive data associated with the bat genomes accessible to the general biological communities, we established a Bat Genome Database (BGD). BGD is an open-access, web-available portal that integrates available data of bat genomes and genes. It hosts data from six bat species, including two megabats and four microbats. Users can query the gene annotations using efficient searching engine, and it offers browsable tracks of bat genomes. Furthermore, an easy-to-use phylogenetic analysis tool was also provided to facilitate online phylogeny study of genes. To the best of our knowledge, BGD is the first database of bat genomes. It will extend our understanding of the bat evolution and be advantageous to the bat sequences analysis. BGD is freely available at: http://donglab.ecnu.edu.cn/databases/BatGenome/. Public Library of Science 2015-06-25 /pmc/articles/PMC4482021/ /pubmed/26110276 http://dx.doi.org/10.1371/journal.pone.0131296 Text en © 2015 Fang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Fang, Jianfei Wang, Xuan Mu, Shuo Zhang, Shuyi Dong, Dong BGD: A Database of Bat Genomes |
title | BGD: A Database of Bat Genomes |
title_full | BGD: A Database of Bat Genomes |
title_fullStr | BGD: A Database of Bat Genomes |
title_full_unstemmed | BGD: A Database of Bat Genomes |
title_short | BGD: A Database of Bat Genomes |
title_sort | bgd: a database of bat genomes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482021/ https://www.ncbi.nlm.nih.gov/pubmed/26110276 http://dx.doi.org/10.1371/journal.pone.0131296 |
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