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Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions

80% of arable land in Africa has low soil fertility and suffers from physical soil problems. Additionally, significant amounts of nutrients are lost every year due to unsustainable soil management practices. This is partially the result of insufficient use of soil management knowledge. To help bridg...

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Autores principales: Hengl, Tomislav, Heuvelink, Gerard B. M., Kempen, Bas, Leenaars, Johan G. B., Walsh, Markus G., Shepherd, Keith D., Sila, Andrew, MacMillan, Robert A., Mendes de Jesus, Jorge, Tamene, Lulseged, Tondoh, Jérôme E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482144/
https://www.ncbi.nlm.nih.gov/pubmed/26110833
http://dx.doi.org/10.1371/journal.pone.0125814
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author Hengl, Tomislav
Heuvelink, Gerard B. M.
Kempen, Bas
Leenaars, Johan G. B.
Walsh, Markus G.
Shepherd, Keith D.
Sila, Andrew
MacMillan, Robert A.
Mendes de Jesus, Jorge
Tamene, Lulseged
Tondoh, Jérôme E.
author_facet Hengl, Tomislav
Heuvelink, Gerard B. M.
Kempen, Bas
Leenaars, Johan G. B.
Walsh, Markus G.
Shepherd, Keith D.
Sila, Andrew
MacMillan, Robert A.
Mendes de Jesus, Jorge
Tamene, Lulseged
Tondoh, Jérôme E.
author_sort Hengl, Tomislav
collection PubMed
description 80% of arable land in Africa has low soil fertility and suffers from physical soil problems. Additionally, significant amounts of nutrients are lost every year due to unsustainable soil management practices. This is partially the result of insufficient use of soil management knowledge. To help bridge the soil information gap in Africa, the Africa Soil Information Service (AfSIS) project was established in 2008. Over the period 2008–2014, the AfSIS project compiled two point data sets: the Africa Soil Profiles (legacy) database and the AfSIS Sentinel Site database. These data sets contain over 28 thousand sampling locations and represent the most comprehensive soil sample data sets of the African continent to date. Utilizing these point data sets in combination with a large number of covariates, we have generated a series of spatial predictions of soil properties relevant to the agricultural management—organic carbon, pH, sand, silt and clay fractions, bulk density, cation-exchange capacity, total nitrogen, exchangeable acidity, Al content and exchangeable bases (Ca, K, Mg, Na). We specifically investigate differences between two predictive approaches: random forests and linear regression. Results of 5-fold cross-validation demonstrate that the random forests algorithm consistently outperforms the linear regression algorithm, with average decreases of 15–75% in Root Mean Squared Error (RMSE) across soil properties and depths. Fitting and running random forests models takes an order of magnitude more time and the modelling success is sensitive to artifacts in the input data, but as long as quality-controlled point data are provided, an increase in soil mapping accuracy can be expected. Results also indicate that globally predicted soil classes (USDA Soil Taxonomy, especially Alfisols and Mollisols) help improve continental scale soil property mapping, and are among the most important predictors. This indicates a promising potential for transferring pedological knowledge from data rich countries to countries with limited soil data.
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spelling pubmed-44821442015-07-01 Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions Hengl, Tomislav Heuvelink, Gerard B. M. Kempen, Bas Leenaars, Johan G. B. Walsh, Markus G. Shepherd, Keith D. Sila, Andrew MacMillan, Robert A. Mendes de Jesus, Jorge Tamene, Lulseged Tondoh, Jérôme E. PLoS One Research Article 80% of arable land in Africa has low soil fertility and suffers from physical soil problems. Additionally, significant amounts of nutrients are lost every year due to unsustainable soil management practices. This is partially the result of insufficient use of soil management knowledge. To help bridge the soil information gap in Africa, the Africa Soil Information Service (AfSIS) project was established in 2008. Over the period 2008–2014, the AfSIS project compiled two point data sets: the Africa Soil Profiles (legacy) database and the AfSIS Sentinel Site database. These data sets contain over 28 thousand sampling locations and represent the most comprehensive soil sample data sets of the African continent to date. Utilizing these point data sets in combination with a large number of covariates, we have generated a series of spatial predictions of soil properties relevant to the agricultural management—organic carbon, pH, sand, silt and clay fractions, bulk density, cation-exchange capacity, total nitrogen, exchangeable acidity, Al content and exchangeable bases (Ca, K, Mg, Na). We specifically investigate differences between two predictive approaches: random forests and linear regression. Results of 5-fold cross-validation demonstrate that the random forests algorithm consistently outperforms the linear regression algorithm, with average decreases of 15–75% in Root Mean Squared Error (RMSE) across soil properties and depths. Fitting and running random forests models takes an order of magnitude more time and the modelling success is sensitive to artifacts in the input data, but as long as quality-controlled point data are provided, an increase in soil mapping accuracy can be expected. Results also indicate that globally predicted soil classes (USDA Soil Taxonomy, especially Alfisols and Mollisols) help improve continental scale soil property mapping, and are among the most important predictors. This indicates a promising potential for transferring pedological knowledge from data rich countries to countries with limited soil data. Public Library of Science 2015-06-25 /pmc/articles/PMC4482144/ /pubmed/26110833 http://dx.doi.org/10.1371/journal.pone.0125814 Text en © 2015 Hengl et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Hengl, Tomislav
Heuvelink, Gerard B. M.
Kempen, Bas
Leenaars, Johan G. B.
Walsh, Markus G.
Shepherd, Keith D.
Sila, Andrew
MacMillan, Robert A.
Mendes de Jesus, Jorge
Tamene, Lulseged
Tondoh, Jérôme E.
Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions
title Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions
title_full Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions
title_fullStr Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions
title_full_unstemmed Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions
title_short Mapping Soil Properties of Africa at 250 m Resolution: Random Forests Significantly Improve Current Predictions
title_sort mapping soil properties of africa at 250 m resolution: random forests significantly improve current predictions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482144/
https://www.ncbi.nlm.nih.gov/pubmed/26110833
http://dx.doi.org/10.1371/journal.pone.0125814
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