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Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator
Models of electrical activity in cardiac cells have become important research tools as they can provide a quantitative description of detailed and integrative physiology. However, cardiac cell models have many parameters, and how uncertainties in these parameters affect the model output is difficult...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482712/ https://www.ncbi.nlm.nih.gov/pubmed/26114610 http://dx.doi.org/10.1371/journal.pone.0130252 |
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author | Chang, Eugene T Y Strong, Mark Clayton, Richard H |
author_facet | Chang, Eugene T Y Strong, Mark Clayton, Richard H |
author_sort | Chang, Eugene T Y |
collection | PubMed |
description | Models of electrical activity in cardiac cells have become important research tools as they can provide a quantitative description of detailed and integrative physiology. However, cardiac cell models have many parameters, and how uncertainties in these parameters affect the model output is difficult to assess without undertaking large numbers of model runs. In this study we show that a surrogate statistical model of a cardiac cell model (the Luo-Rudy 1991 model) can be built using Gaussian process (GP) emulators. Using this approach we examined how eight outputs describing the action potential shape and action potential duration restitution depend on six inputs, which we selected to be the maximum conductances in the Luo-Rudy 1991 model. We found that the GP emulators could be fitted to a small number of model runs, and behaved as would be expected based on the underlying physiology that the model represents. We have shown that an emulator approach is a powerful tool for uncertainty and sensitivity analysis in cardiac cell models. |
format | Online Article Text |
id | pubmed-4482712 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44827122015-06-29 Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator Chang, Eugene T Y Strong, Mark Clayton, Richard H PLoS One Research Article Models of electrical activity in cardiac cells have become important research tools as they can provide a quantitative description of detailed and integrative physiology. However, cardiac cell models have many parameters, and how uncertainties in these parameters affect the model output is difficult to assess without undertaking large numbers of model runs. In this study we show that a surrogate statistical model of a cardiac cell model (the Luo-Rudy 1991 model) can be built using Gaussian process (GP) emulators. Using this approach we examined how eight outputs describing the action potential shape and action potential duration restitution depend on six inputs, which we selected to be the maximum conductances in the Luo-Rudy 1991 model. We found that the GP emulators could be fitted to a small number of model runs, and behaved as would be expected based on the underlying physiology that the model represents. We have shown that an emulator approach is a powerful tool for uncertainty and sensitivity analysis in cardiac cell models. Public Library of Science 2015-06-26 /pmc/articles/PMC4482712/ /pubmed/26114610 http://dx.doi.org/10.1371/journal.pone.0130252 Text en © 2015 Chang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Chang, Eugene T Y Strong, Mark Clayton, Richard H Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator |
title | Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator |
title_full | Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator |
title_fullStr | Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator |
title_full_unstemmed | Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator |
title_short | Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator |
title_sort | bayesian sensitivity analysis of a cardiac cell model using a gaussian process emulator |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482712/ https://www.ncbi.nlm.nih.gov/pubmed/26114610 http://dx.doi.org/10.1371/journal.pone.0130252 |
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