Cargando…

Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers

BACKGROUND: Blood smear microscopic images are routinely investigated by haematologists to diagnose most blood diseases. However, the task is quite tedious and time consuming. An automatic detection and classification of white blood cells within such images can accelerate the process tremendously. I...

Descripción completa

Detalles Bibliográficos
Autores principales: Prinyakupt, Jaroonrut, Pluempitiwiriyawej, Charnchai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485641/
https://www.ncbi.nlm.nih.gov/pubmed/26123131
http://dx.doi.org/10.1186/s12938-015-0037-1
_version_ 1782378796921389056
author Prinyakupt, Jaroonrut
Pluempitiwiriyawej, Charnchai
author_facet Prinyakupt, Jaroonrut
Pluempitiwiriyawej, Charnchai
author_sort Prinyakupt, Jaroonrut
collection PubMed
description BACKGROUND: Blood smear microscopic images are routinely investigated by haematologists to diagnose most blood diseases. However, the task is quite tedious and time consuming. An automatic detection and classification of white blood cells within such images can accelerate the process tremendously. In this paper we propose a system to locate white blood cells within microscopic blood smear images, segment them into nucleus and cytoplasm regions, extract suitable features and finally, classify them into five types: basophil, eosinophil, neutrophil, lymphocyte and monocyte. DATASET: Two sets of blood smear images were used in this study’s experiments. Dataset 1, collected from Rangsit University, were normal peripheral blood slides under light microscope with 100× magnification; 555 images with 601 white blood cells were captured by a Nikon DS-Fi2 high-definition color camera and saved in JPG format of size 960 × 1,280 pixels at 15 pixels per 1 μm resolution. In dataset 2, 477 cropped white blood cell images were downloaded from CellaVision.com. They are in JPG format of size 360 × 363 pixels. The resolution is estimated to be 10 pixels per 1 μm. METHODS: The proposed system comprises a pre-processing step, nucleus segmentation, cell segmentation, feature extraction, feature selection and classification. The main concept of the segmentation algorithm employed uses white blood cell’s morphological properties and the calibrated size of a real cell relative to image resolution. The segmentation process combined thresholding, morphological operation and ellipse curve fitting. Consequently, several features were extracted from the segmented nucleus and cytoplasm regions. Prominent features were then chosen by a greedy search algorithm called sequential forward selection. Finally, with a set of selected prominent features, both linear and naïve Bayes classifiers were applied for performance comparison. This system was tested on normal peripheral blood smear slide images from two datasets. RESULTS: Two sets of comparison were performed: segmentation and classification. The automatically segmented results were compared to the ones obtained manually by a haematologist. It was found that the proposed method is consistent and coherent in both datasets, with dice similarity of 98.9 and 91.6% for average segmented nucleus and cell regions, respectively. Furthermore, the overall correction rate in the classification phase is about 98 and 94% for linear and naïve Bayes models, respectively. CONCLUSIONS: The proposed system, based on normal white blood cell morphology and its characteristics, was applied to two different datasets. The results of the calibrated segmentation process on both datasets are fast, robust, efficient and coherent. Meanwhile, the classification of normal white blood cells into five types shows high sensitivity in both linear and naïve Bayes models, with slightly better results in the linear classifier.
format Online
Article
Text
id pubmed-4485641
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-44856412015-07-01 Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers Prinyakupt, Jaroonrut Pluempitiwiriyawej, Charnchai Biomed Eng Online Research BACKGROUND: Blood smear microscopic images are routinely investigated by haematologists to diagnose most blood diseases. However, the task is quite tedious and time consuming. An automatic detection and classification of white blood cells within such images can accelerate the process tremendously. In this paper we propose a system to locate white blood cells within microscopic blood smear images, segment them into nucleus and cytoplasm regions, extract suitable features and finally, classify them into five types: basophil, eosinophil, neutrophil, lymphocyte and monocyte. DATASET: Two sets of blood smear images were used in this study’s experiments. Dataset 1, collected from Rangsit University, were normal peripheral blood slides under light microscope with 100× magnification; 555 images with 601 white blood cells were captured by a Nikon DS-Fi2 high-definition color camera and saved in JPG format of size 960 × 1,280 pixels at 15 pixels per 1 μm resolution. In dataset 2, 477 cropped white blood cell images were downloaded from CellaVision.com. They are in JPG format of size 360 × 363 pixels. The resolution is estimated to be 10 pixels per 1 μm. METHODS: The proposed system comprises a pre-processing step, nucleus segmentation, cell segmentation, feature extraction, feature selection and classification. The main concept of the segmentation algorithm employed uses white blood cell’s morphological properties and the calibrated size of a real cell relative to image resolution. The segmentation process combined thresholding, morphological operation and ellipse curve fitting. Consequently, several features were extracted from the segmented nucleus and cytoplasm regions. Prominent features were then chosen by a greedy search algorithm called sequential forward selection. Finally, with a set of selected prominent features, both linear and naïve Bayes classifiers were applied for performance comparison. This system was tested on normal peripheral blood smear slide images from two datasets. RESULTS: Two sets of comparison were performed: segmentation and classification. The automatically segmented results were compared to the ones obtained manually by a haematologist. It was found that the proposed method is consistent and coherent in both datasets, with dice similarity of 98.9 and 91.6% for average segmented nucleus and cell regions, respectively. Furthermore, the overall correction rate in the classification phase is about 98 and 94% for linear and naïve Bayes models, respectively. CONCLUSIONS: The proposed system, based on normal white blood cell morphology and its characteristics, was applied to two different datasets. The results of the calibrated segmentation process on both datasets are fast, robust, efficient and coherent. Meanwhile, the classification of normal white blood cells into five types shows high sensitivity in both linear and naïve Bayes models, with slightly better results in the linear classifier. BioMed Central 2015-06-30 /pmc/articles/PMC4485641/ /pubmed/26123131 http://dx.doi.org/10.1186/s12938-015-0037-1 Text en © Prinyakupt and Pluempitiwiriyawej. 2015 This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Prinyakupt, Jaroonrut
Pluempitiwiriyawej, Charnchai
Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers
title Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers
title_full Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers
title_fullStr Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers
title_full_unstemmed Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers
title_short Segmentation of white blood cells and comparison of cell morphology by linear and naïve Bayes classifiers
title_sort segmentation of white blood cells and comparison of cell morphology by linear and naïve bayes classifiers
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485641/
https://www.ncbi.nlm.nih.gov/pubmed/26123131
http://dx.doi.org/10.1186/s12938-015-0037-1
work_keys_str_mv AT prinyakuptjaroonrut segmentationofwhitebloodcellsandcomparisonofcellmorphologybylinearandnaivebayesclassifiers
AT pluempitiwiriyawejcharnchai segmentationofwhitebloodcellsandcomparisonofcellmorphologybylinearandnaivebayesclassifiers