The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis fr...

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Autores principales: Darde, Thomas A., Sallou, Olivier, Becker, Emmanuelle, Evrard, Bertrand, Monjeaud, Cyril, Le Bras, Yvan, Jégou, Bernard, Collin, Olivier, Rolland, Antoine D., Chalmel, Frédéric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Web Server issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489245/
https://www.ncbi.nlm.nih.gov/pubmed/25883147
http://dx.doi.org/10.1093/nar/gkv345
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author Darde, Thomas A.
Sallou, Olivier
Becker, Emmanuelle
Evrard, Bertrand
Monjeaud, Cyril
Le Bras, Yvan
Jégou, Bernard
Collin, Olivier
Rolland, Antoine D.
Chalmel, Frédéric
author_facet Darde, Thomas A.
Sallou, Olivier
Becker, Emmanuelle
Evrard, Bertrand
Monjeaud, Cyril
Le Bras, Yvan
Jégou, Bernard
Collin, Olivier
Rolland, Antoine D.
Chalmel, Frédéric
author_sort Darde, Thomas A.
collection PubMed
description We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org.
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spelling pubmed-44892452015-07-07 The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community Darde, Thomas A. Sallou, Olivier Becker, Emmanuelle Evrard, Bertrand Monjeaud, Cyril Le Bras, Yvan Jégou, Bernard Collin, Olivier Rolland, Antoine D. Chalmel, Frédéric Nucleic Acids Res Web Server issue We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org. Oxford University Press 2015-07-01 2015-04-16 /pmc/articles/PMC4489245/ /pubmed/25883147 http://dx.doi.org/10.1093/nar/gkv345 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server issue
Darde, Thomas A.
Sallou, Olivier
Becker, Emmanuelle
Evrard, Bertrand
Monjeaud, Cyril
Le Bras, Yvan
Jégou, Bernard
Collin, Olivier
Rolland, Antoine D.
Chalmel, Frédéric
The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
title The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
title_full The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
title_fullStr The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
title_full_unstemmed The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
title_short The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
title_sort reprogenomics viewer: an integrative cross-species toolbox for the reproductive science community
topic Web Server issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489245/
https://www.ncbi.nlm.nih.gov/pubmed/25883147
http://dx.doi.org/10.1093/nar/gkv345
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