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Galahad: a web server for drug effect analysis from gene expression
Galahad (https://galahad.esat.kuleuven.be) is a web-based application for analysis of drug effects. It provides an intuitive interface to be used by anybody interested in leveraging microarray data to gain insights into the pharmacological effects of a drug, mainly identification of candidate target...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489261/ https://www.ncbi.nlm.nih.gov/pubmed/25940630 http://dx.doi.org/10.1093/nar/gkv436 |
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author | Laenen, Griet Ardeshirdavani, Amin Moreau, Yves Thorrez, Lieven |
author_facet | Laenen, Griet Ardeshirdavani, Amin Moreau, Yves Thorrez, Lieven |
author_sort | Laenen, Griet |
collection | PubMed |
description | Galahad (https://galahad.esat.kuleuven.be) is a web-based application for analysis of drug effects. It provides an intuitive interface to be used by anybody interested in leveraging microarray data to gain insights into the pharmacological effects of a drug, mainly identification of candidate targets, elucidation of mode of action and understanding of off-target effects. The core of Galahad is a network-based analysis method of gene expression. As an input, Galahad takes raw Affymetrix human microarray data from treatment versus control experiments and provides quality control and data exploration tools, as well as computation of differential expression. Alternatively, differential expression values can be uploaded directly. Using these differential expression values, drug target prioritization and both pathway and disease enrichment can be calculated and visualized. Drug target prioritization is based on the integration of the gene expression data with a functional protein association network. The web site is free and open to all and there is no login requirement. |
format | Online Article Text |
id | pubmed-4489261 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-44892612015-07-07 Galahad: a web server for drug effect analysis from gene expression Laenen, Griet Ardeshirdavani, Amin Moreau, Yves Thorrez, Lieven Nucleic Acids Res Web Server issue Galahad (https://galahad.esat.kuleuven.be) is a web-based application for analysis of drug effects. It provides an intuitive interface to be used by anybody interested in leveraging microarray data to gain insights into the pharmacological effects of a drug, mainly identification of candidate targets, elucidation of mode of action and understanding of off-target effects. The core of Galahad is a network-based analysis method of gene expression. As an input, Galahad takes raw Affymetrix human microarray data from treatment versus control experiments and provides quality control and data exploration tools, as well as computation of differential expression. Alternatively, differential expression values can be uploaded directly. Using these differential expression values, drug target prioritization and both pathway and disease enrichment can be calculated and visualized. Drug target prioritization is based on the integration of the gene expression data with a functional protein association network. The web site is free and open to all and there is no login requirement. Oxford University Press 2015-07-01 2015-05-04 /pmc/articles/PMC4489261/ /pubmed/25940630 http://dx.doi.org/10.1093/nar/gkv436 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Server issue Laenen, Griet Ardeshirdavani, Amin Moreau, Yves Thorrez, Lieven Galahad: a web server for drug effect analysis from gene expression |
title | Galahad: a web server for drug effect analysis from gene expression |
title_full | Galahad: a web server for drug effect analysis from gene expression |
title_fullStr | Galahad: a web server for drug effect analysis from gene expression |
title_full_unstemmed | Galahad: a web server for drug effect analysis from gene expression |
title_short | Galahad: a web server for drug effect analysis from gene expression |
title_sort | galahad: a web server for drug effect analysis from gene expression |
topic | Web Server issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489261/ https://www.ncbi.nlm.nih.gov/pubmed/25940630 http://dx.doi.org/10.1093/nar/gkv436 |
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