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Babelomics 5.0: functional interpretation for new generations of genomic data
Babelomics has been running for more than one decade offering a user-friendly interface for the functional analysis of gene expression and genomic data. Here we present its fifth release, which includes support for Next Generation Sequencing data including gene expression (RNA-seq), exome or genome...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489263/ https://www.ncbi.nlm.nih.gov/pubmed/25897133 http://dx.doi.org/10.1093/nar/gkv384 |
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author | Alonso, Roberto Salavert, Francisco Garcia-Garcia, Francisco Carbonell-Caballero, Jose Bleda, Marta Garcia-Alonso, Luz Sanchis-Juan, Alba Perez-Gil, Daniel Marin-Garcia, Pablo Sanchez, Ruben Cubuk, Cankut Hidalgo, Marta R. Amadoz, Alicia Hernansaiz-Ballesteros, Rosa D. Alemán, Alejandro Tarraga, Joaquin Montaner, David Medina, Ignacio Dopazo, Joaquin |
author_facet | Alonso, Roberto Salavert, Francisco Garcia-Garcia, Francisco Carbonell-Caballero, Jose Bleda, Marta Garcia-Alonso, Luz Sanchis-Juan, Alba Perez-Gil, Daniel Marin-Garcia, Pablo Sanchez, Ruben Cubuk, Cankut Hidalgo, Marta R. Amadoz, Alicia Hernansaiz-Ballesteros, Rosa D. Alemán, Alejandro Tarraga, Joaquin Montaner, David Medina, Ignacio Dopazo, Joaquin |
author_sort | Alonso, Roberto |
collection | PubMed |
description | Babelomics has been running for more than one decade offering a user-friendly interface for the functional analysis of gene expression and genomic data. Here we present its fifth release, which includes support for Next Generation Sequencing data including gene expression (RNA-seq), exome or genome resequencing. Babelomics has simplified its interface, being now more intuitive. Improved visualization options, such as a genome viewer as well as an interactive network viewer, have been implemented. New technical enhancements at both, client and server sides, makes the user experience faster and more dynamic. Babelomics offers user-friendly access to a full range of methods that cover: (i) primary data analysis, (ii) a variety of tests for different experimental designs and (iii) different enrichment and network analysis algorithms for the interpretation of the results of such tests in the proper functional context. In addition to the public server, local copies of Babelomics can be downloaded and installed. Babelomics is freely available at: http://www.babelomics.org. |
format | Online Article Text |
id | pubmed-4489263 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-44892632015-07-07 Babelomics 5.0: functional interpretation for new generations of genomic data Alonso, Roberto Salavert, Francisco Garcia-Garcia, Francisco Carbonell-Caballero, Jose Bleda, Marta Garcia-Alonso, Luz Sanchis-Juan, Alba Perez-Gil, Daniel Marin-Garcia, Pablo Sanchez, Ruben Cubuk, Cankut Hidalgo, Marta R. Amadoz, Alicia Hernansaiz-Ballesteros, Rosa D. Alemán, Alejandro Tarraga, Joaquin Montaner, David Medina, Ignacio Dopazo, Joaquin Nucleic Acids Res Web Server issue Babelomics has been running for more than one decade offering a user-friendly interface for the functional analysis of gene expression and genomic data. Here we present its fifth release, which includes support for Next Generation Sequencing data including gene expression (RNA-seq), exome or genome resequencing. Babelomics has simplified its interface, being now more intuitive. Improved visualization options, such as a genome viewer as well as an interactive network viewer, have been implemented. New technical enhancements at both, client and server sides, makes the user experience faster and more dynamic. Babelomics offers user-friendly access to a full range of methods that cover: (i) primary data analysis, (ii) a variety of tests for different experimental designs and (iii) different enrichment and network analysis algorithms for the interpretation of the results of such tests in the proper functional context. In addition to the public server, local copies of Babelomics can be downloaded and installed. Babelomics is freely available at: http://www.babelomics.org. Oxford University Press 2015-07-01 2015-04-20 /pmc/articles/PMC4489263/ /pubmed/25897133 http://dx.doi.org/10.1093/nar/gkv384 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Server issue Alonso, Roberto Salavert, Francisco Garcia-Garcia, Francisco Carbonell-Caballero, Jose Bleda, Marta Garcia-Alonso, Luz Sanchis-Juan, Alba Perez-Gil, Daniel Marin-Garcia, Pablo Sanchez, Ruben Cubuk, Cankut Hidalgo, Marta R. Amadoz, Alicia Hernansaiz-Ballesteros, Rosa D. Alemán, Alejandro Tarraga, Joaquin Montaner, David Medina, Ignacio Dopazo, Joaquin Babelomics 5.0: functional interpretation for new generations of genomic data |
title | Babelomics 5.0: functional interpretation for new generations of genomic data |
title_full | Babelomics 5.0: functional interpretation for new generations of genomic data |
title_fullStr | Babelomics 5.0: functional interpretation for new generations of genomic data |
title_full_unstemmed | Babelomics 5.0: functional interpretation for new generations of genomic data |
title_short | Babelomics 5.0: functional interpretation for new generations of genomic data |
title_sort | babelomics 5.0: functional interpretation for new generations of genomic data |
topic | Web Server issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489263/ https://www.ncbi.nlm.nih.gov/pubmed/25897133 http://dx.doi.org/10.1093/nar/gkv384 |
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