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Babelomics 5.0: functional interpretation for new generations of genomic data

Babelomics has been running for more than one decade offering a user-friendly interface for the functional analysis of gene expression and genomic data. Here we present its fifth release, which includes support for Next Generation Sequencing data including gene expression (RNA-seq), exome or genome...

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Autores principales: Alonso, Roberto, Salavert, Francisco, Garcia-Garcia, Francisco, Carbonell-Caballero, Jose, Bleda, Marta, Garcia-Alonso, Luz, Sanchis-Juan, Alba, Perez-Gil, Daniel, Marin-Garcia, Pablo, Sanchez, Ruben, Cubuk, Cankut, Hidalgo, Marta R., Amadoz, Alicia, Hernansaiz-Ballesteros, Rosa D., Alemán, Alejandro, Tarraga, Joaquin, Montaner, David, Medina, Ignacio, Dopazo, Joaquin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489263/
https://www.ncbi.nlm.nih.gov/pubmed/25897133
http://dx.doi.org/10.1093/nar/gkv384
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author Alonso, Roberto
Salavert, Francisco
Garcia-Garcia, Francisco
Carbonell-Caballero, Jose
Bleda, Marta
Garcia-Alonso, Luz
Sanchis-Juan, Alba
Perez-Gil, Daniel
Marin-Garcia, Pablo
Sanchez, Ruben
Cubuk, Cankut
Hidalgo, Marta R.
Amadoz, Alicia
Hernansaiz-Ballesteros, Rosa D.
Alemán, Alejandro
Tarraga, Joaquin
Montaner, David
Medina, Ignacio
Dopazo, Joaquin
author_facet Alonso, Roberto
Salavert, Francisco
Garcia-Garcia, Francisco
Carbonell-Caballero, Jose
Bleda, Marta
Garcia-Alonso, Luz
Sanchis-Juan, Alba
Perez-Gil, Daniel
Marin-Garcia, Pablo
Sanchez, Ruben
Cubuk, Cankut
Hidalgo, Marta R.
Amadoz, Alicia
Hernansaiz-Ballesteros, Rosa D.
Alemán, Alejandro
Tarraga, Joaquin
Montaner, David
Medina, Ignacio
Dopazo, Joaquin
author_sort Alonso, Roberto
collection PubMed
description Babelomics has been running for more than one decade offering a user-friendly interface for the functional analysis of gene expression and genomic data. Here we present its fifth release, which includes support for Next Generation Sequencing data including gene expression (RNA-seq), exome or genome resequencing. Babelomics has simplified its interface, being now more intuitive. Improved visualization options, such as a genome viewer as well as an interactive network viewer, have been implemented. New technical enhancements at both, client and server sides, makes the user experience faster and more dynamic. Babelomics offers user-friendly access to a full range of methods that cover: (i) primary data analysis, (ii) a variety of tests for different experimental designs and (iii) different enrichment and network analysis algorithms for the interpretation of the results of such tests in the proper functional context. In addition to the public server, local copies of Babelomics can be downloaded and installed. Babelomics is freely available at: http://www.babelomics.org.
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spelling pubmed-44892632015-07-07 Babelomics 5.0: functional interpretation for new generations of genomic data Alonso, Roberto Salavert, Francisco Garcia-Garcia, Francisco Carbonell-Caballero, Jose Bleda, Marta Garcia-Alonso, Luz Sanchis-Juan, Alba Perez-Gil, Daniel Marin-Garcia, Pablo Sanchez, Ruben Cubuk, Cankut Hidalgo, Marta R. Amadoz, Alicia Hernansaiz-Ballesteros, Rosa D. Alemán, Alejandro Tarraga, Joaquin Montaner, David Medina, Ignacio Dopazo, Joaquin Nucleic Acids Res Web Server issue Babelomics has been running for more than one decade offering a user-friendly interface for the functional analysis of gene expression and genomic data. Here we present its fifth release, which includes support for Next Generation Sequencing data including gene expression (RNA-seq), exome or genome resequencing. Babelomics has simplified its interface, being now more intuitive. Improved visualization options, such as a genome viewer as well as an interactive network viewer, have been implemented. New technical enhancements at both, client and server sides, makes the user experience faster and more dynamic. Babelomics offers user-friendly access to a full range of methods that cover: (i) primary data analysis, (ii) a variety of tests for different experimental designs and (iii) different enrichment and network analysis algorithms for the interpretation of the results of such tests in the proper functional context. In addition to the public server, local copies of Babelomics can be downloaded and installed. Babelomics is freely available at: http://www.babelomics.org. Oxford University Press 2015-07-01 2015-04-20 /pmc/articles/PMC4489263/ /pubmed/25897133 http://dx.doi.org/10.1093/nar/gkv384 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server issue
Alonso, Roberto
Salavert, Francisco
Garcia-Garcia, Francisco
Carbonell-Caballero, Jose
Bleda, Marta
Garcia-Alonso, Luz
Sanchis-Juan, Alba
Perez-Gil, Daniel
Marin-Garcia, Pablo
Sanchez, Ruben
Cubuk, Cankut
Hidalgo, Marta R.
Amadoz, Alicia
Hernansaiz-Ballesteros, Rosa D.
Alemán, Alejandro
Tarraga, Joaquin
Montaner, David
Medina, Ignacio
Dopazo, Joaquin
Babelomics 5.0: functional interpretation for new generations of genomic data
title Babelomics 5.0: functional interpretation for new generations of genomic data
title_full Babelomics 5.0: functional interpretation for new generations of genomic data
title_fullStr Babelomics 5.0: functional interpretation for new generations of genomic data
title_full_unstemmed Babelomics 5.0: functional interpretation for new generations of genomic data
title_short Babelomics 5.0: functional interpretation for new generations of genomic data
title_sort babelomics 5.0: functional interpretation for new generations of genomic data
topic Web Server issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489263/
https://www.ncbi.nlm.nih.gov/pubmed/25897133
http://dx.doi.org/10.1093/nar/gkv384
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