Cargando…

Pathways with PathWhiz

PathWhiz (http://smpdb.ca/pathwhiz) is a web server designed to create colourful, visually pleasing and biologically accurate pathway diagrams that are both machine-readable and interactive. As a web server, PathWhiz is accessible from almost any place and compatible with essentially any operating s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pon, Allison, Jewison, Timothy, Su, Yilu, Liang, Yongjie, Knox, Craig, Maciejewski, Adam, Wilson, Michael, Wishart, David S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2015
Materias:	Web Server issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489271/ https://www.ncbi.nlm.nih.gov/pubmed/25934797 http://dx.doi.org/10.1093/nar/gkv399

Ejemplares similares

PHASTER: a better, faster version of the PHAST phage search tool
por: Arndt, David, et al.
Publicado: (2016)

Heatmapper: web-enabled heat mapping for all
por: Babicki, Sasha, et al.
Publicado: (2016)

PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more
por: Liu, Yifeng, et al.
Publicado: (2015)

SensiPath: computer-aided design of sensing-enabling metabolic pathways
por: Delépine, Baudoin, et al.
Publicado: (2016)

iPath3.0: interactive pathways explorer v3
por: Darzi, Youssef, et al.
Publicado: (2018)

novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model
por: Ding, Shaozhen, et al.
Publicado: (2020)

CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts
por: Hafsa, Noor E., et al.
Publicado: (2015)

MetaboAnalyst 3.0—making metabolomics more meaningful
por: Xia, Jianguo, et al.
Publicado: (2015)

GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data
por: Yang, Jin Ok, et al.
Publicado: (2007)

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
por: Chong, Jasmine, et al.
Publicado: (2018)

CFM-ID 4.0 – a web server for accurate MS-based metabolite identification
por: Wang, Fei, et al.
Publicado: (2022)

PHASTEST: faster than PHASTER, better than PHAST
por: Wishart, David S, et al.
Publicado: (2023)

BioTransformer 3.0—a web server for accurately predicting metabolic transformation products
por: Wishart, David S, et al.
Publicado: (2022)

PlasMapper 3.0—a web server for generating, editing, annotating and visualizing publication quality plasmid maps
por: Wishart, David S, et al.
Publicado: (2023)

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models
por: Salavert, Francisco, et al.
Publicado: (2016)

Pathview Web: user friendly pathway visualization and data integration
por: Luo, Weijun, et al.
Publicado: (2017)

KeyPathwayMinerWeb: online multi-omics network enrichment
por: List, Markus, et al.
Publicado: (2016)

minepath.org: a free interactive pathway analysis web server
por: Koumakis, Lefteris, et al.
Publicado: (2017)

CAVE: a cloud-based platform for analysis and visualization of metabolic pathways
por: Mao, Zhitao, et al.
Publicado: (2023)

PathwAX: a web server for network crosstalk based pathway annotation
por: Ogris, Christoph, et al.
Publicado: (2016)

SPEED2: inferring upstream pathway activity from differential gene expression
por: Rydenfelt, Mattias, et al.
Publicado: (2020)

CPA: a web-based platform for consensus pathway analysis and interactive visualization
por: Nguyen, Hung, et al.
Publicado: (2021)

Assessing the impact of mutations found in next generation sequencing data over human signaling pathways
por: Hernansaiz-Ballesteros, Rosa D., et al.
Publicado: (2015)

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data
por: Hernández-de-Diego, Rafael, et al.
Publicado: (2018)

IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations
por: Perez-Romero, Camilo Andres, et al.
Publicado: (2019)

miRTargetLink 2.0—interactive miRNA target gene and target pathway networks
por: Kern, Fabian, et al.
Publicado: (2021)

MANORAA (Mapping Analogous Nuclei Onto Residue And Affinity) for identifying protein–ligand fragment interaction, pathways and SNPs
por: Tanramluk, Duangrudee, et al.
Publicado: (2016)

MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind
por: Kuwahara, Hiroyuki, et al.
Publicado: (2016)

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases
por: Liu, Tianyuan, et al.
Publicado: (2022)

ResponseNet v.3: revealing signaling and regulatory pathways connecting your proteins and genes across human tissues
por: Basha, Omer, et al.
Publicado: (2019)

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics
por: Czaplewski, Cezary, et al.
Publicado: (2018)

JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs
por: Roll, James, et al.
Publicado: (2016)

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database
por: Jewison, Timothy, et al.
Publicado: (2014)

R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server
por: Cannone, Jamie J., et al.
Publicado: (2015)

The MEME Suite
por: Bailey, Timothy L., et al.
Publicado: (2015)

RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
por: Shaikh, Bilal, et al.
Publicado: (2021)

miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems
por: Kern, Fabian, et al.
Publicado: (2020)

FATCAT 2.0: towards a better understanding of the structural diversity of proteins
por: Li, Zhanwen, et al.
Publicado: (2020)

BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations
por: Bayarri, Genís, et al.
Publicado: (2022)

SynLeGG: analysis and visualization of multiomics data for discovery of cancer ‘Achilles Heels’ and gene function relationships
por: Wappett, Mark, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_7b1ot0lkg0bc1kbig91hq4h0kq