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The BioMart community portal: an innovative alternative to large, centralized data repositories

The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biologi...

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Autores principales: Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J., Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W., Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J., Dassi, Erik, Genova, Alex Di, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C., Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M., Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K., Hayes, Richard D., Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M., Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W., Dayem Ullah, Abu Z., Wang, Jun, Ware, Doreen, Wong-Erasmus, Marie, Youens-Clark, Ken, Zadissa, Amonida, Zhang, Shi-Jian, Kasprzyk, Arek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294/
https://www.ncbi.nlm.nih.gov/pubmed/25897122
http://dx.doi.org/10.1093/nar/gkv350
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author Smedley, Damian
Haider, Syed
Durinck, Steffen
Pandini, Luca
Provero, Paolo
Allen, James
Arnaiz, Olivier
Awedh, Mohammad Hamza
Baldock, Richard
Barbiera, Giulia
Bardou, Philippe
Beck, Tim
Blake, Andrew
Bonierbale, Merideth
Brookes, Anthony J.
Bucci, Gabriele
Buetti, Iwan
Burge, Sarah
Cabau, Cédric
Carlson, Joseph W.
Chelala, Claude
Chrysostomou, Charalambos
Cittaro, Davide
Collin, Olivier
Cordova, Raul
Cutts, Rosalind J.
Dassi, Erik
Genova, Alex Di
Djari, Anis
Esposito, Anthony
Estrella, Heather
Eyras, Eduardo
Fernandez-Banet, Julio
Forbes, Simon
Free, Robert C.
Fujisawa, Takatomo
Gadaleta, Emanuela
Garcia-Manteiga, Jose M.
Goodstein, David
Gray, Kristian
Guerra-Assunção, José Afonso
Haggarty, Bernard
Han, Dong-Jin
Han, Byung Woo
Harris, Todd
Harshbarger, Jayson
Hastings, Robert K.
Hayes, Richard D.
Hoede, Claire
Hu, Shen
Hu, Zhi-Liang
Hutchins, Lucie
Kan, Zhengyan
Kawaji, Hideya
Keliet, Aminah
Kerhornou, Arnaud
Kim, Sunghoon
Kinsella, Rhoda
Klopp, Christophe
Kong, Lei
Lawson, Daniel
Lazarevic, Dejan
Lee, Ji-Hyun
Letellier, Thomas
Li, Chuan-Yun
Lio, Pietro
Liu, Chu-Jun
Luo, Jie
Maass, Alejandro
Mariette, Jerome
Maurel, Thomas
Merella, Stefania
Mohamed, Azza Mostafa
Moreews, Francois
Nabihoudine, Ibounyamine
Ndegwa, Nelson
Noirot, Céline
Perez-Llamas, Cristian
Primig, Michael
Quattrone, Alessandro
Quesneville, Hadi
Rambaldi, Davide
Reecy, James
Riba, Michela
Rosanoff, Steven
Saddiq, Amna Ali
Salas, Elisa
Sallou, Olivier
Shepherd, Rebecca
Simon, Reinhard
Sperling, Linda
Spooner, William
Staines, Daniel M.
Steinbach, Delphine
Stone, Kevin
Stupka, Elia
Teague, Jon W.
Dayem Ullah, Abu Z.
Wang, Jun
Ware, Doreen
Wong-Erasmus, Marie
Youens-Clark, Ken
Zadissa, Amonida
Zhang, Shi-Jian
Kasprzyk, Arek
author_facet Smedley, Damian
Haider, Syed
Durinck, Steffen
Pandini, Luca
Provero, Paolo
Allen, James
Arnaiz, Olivier
Awedh, Mohammad Hamza
Baldock, Richard
Barbiera, Giulia
Bardou, Philippe
Beck, Tim
Blake, Andrew
Bonierbale, Merideth
Brookes, Anthony J.
Bucci, Gabriele
Buetti, Iwan
Burge, Sarah
Cabau, Cédric
Carlson, Joseph W.
Chelala, Claude
Chrysostomou, Charalambos
Cittaro, Davide
Collin, Olivier
Cordova, Raul
Cutts, Rosalind J.
Dassi, Erik
Genova, Alex Di
Djari, Anis
Esposito, Anthony
Estrella, Heather
Eyras, Eduardo
Fernandez-Banet, Julio
Forbes, Simon
Free, Robert C.
Fujisawa, Takatomo
Gadaleta, Emanuela
Garcia-Manteiga, Jose M.
Goodstein, David
Gray, Kristian
Guerra-Assunção, José Afonso
Haggarty, Bernard
Han, Dong-Jin
Han, Byung Woo
Harris, Todd
Harshbarger, Jayson
Hastings, Robert K.
Hayes, Richard D.
Hoede, Claire
Hu, Shen
Hu, Zhi-Liang
Hutchins, Lucie
Kan, Zhengyan
Kawaji, Hideya
Keliet, Aminah
Kerhornou, Arnaud
Kim, Sunghoon
Kinsella, Rhoda
Klopp, Christophe
Kong, Lei
Lawson, Daniel
Lazarevic, Dejan
Lee, Ji-Hyun
Letellier, Thomas
Li, Chuan-Yun
Lio, Pietro
Liu, Chu-Jun
Luo, Jie
Maass, Alejandro
Mariette, Jerome
Maurel, Thomas
Merella, Stefania
Mohamed, Azza Mostafa
Moreews, Francois
Nabihoudine, Ibounyamine
Ndegwa, Nelson
Noirot, Céline
Perez-Llamas, Cristian
Primig, Michael
Quattrone, Alessandro
Quesneville, Hadi
Rambaldi, Davide
Reecy, James
Riba, Michela
Rosanoff, Steven
Saddiq, Amna Ali
Salas, Elisa
Sallou, Olivier
Shepherd, Rebecca
Simon, Reinhard
Sperling, Linda
Spooner, William
Staines, Daniel M.
Steinbach, Delphine
Stone, Kevin
Stupka, Elia
Teague, Jon W.
Dayem Ullah, Abu Z.
Wang, Jun
Ware, Doreen
Wong-Erasmus, Marie
Youens-Clark, Ken
Zadissa, Amonida
Zhang, Shi-Jian
Kasprzyk, Arek
author_sort Smedley, Damian
collection PubMed
description The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations.
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spelling pubmed-44892942015-07-07 The BioMart community portal: an innovative alternative to large, centralized data repositories Smedley, Damian Haider, Syed Durinck, Steffen Pandini, Luca Provero, Paolo Allen, James Arnaiz, Olivier Awedh, Mohammad Hamza Baldock, Richard Barbiera, Giulia Bardou, Philippe Beck, Tim Blake, Andrew Bonierbale, Merideth Brookes, Anthony J. Bucci, Gabriele Buetti, Iwan Burge, Sarah Cabau, Cédric Carlson, Joseph W. Chelala, Claude Chrysostomou, Charalambos Cittaro, Davide Collin, Olivier Cordova, Raul Cutts, Rosalind J. Dassi, Erik Genova, Alex Di Djari, Anis Esposito, Anthony Estrella, Heather Eyras, Eduardo Fernandez-Banet, Julio Forbes, Simon Free, Robert C. Fujisawa, Takatomo Gadaleta, Emanuela Garcia-Manteiga, Jose M. Goodstein, David Gray, Kristian Guerra-Assunção, José Afonso Haggarty, Bernard Han, Dong-Jin Han, Byung Woo Harris, Todd Harshbarger, Jayson Hastings, Robert K. Hayes, Richard D. Hoede, Claire Hu, Shen Hu, Zhi-Liang Hutchins, Lucie Kan, Zhengyan Kawaji, Hideya Keliet, Aminah Kerhornou, Arnaud Kim, Sunghoon Kinsella, Rhoda Klopp, Christophe Kong, Lei Lawson, Daniel Lazarevic, Dejan Lee, Ji-Hyun Letellier, Thomas Li, Chuan-Yun Lio, Pietro Liu, Chu-Jun Luo, Jie Maass, Alejandro Mariette, Jerome Maurel, Thomas Merella, Stefania Mohamed, Azza Mostafa Moreews, Francois Nabihoudine, Ibounyamine Ndegwa, Nelson Noirot, Céline Perez-Llamas, Cristian Primig, Michael Quattrone, Alessandro Quesneville, Hadi Rambaldi, Davide Reecy, James Riba, Michela Rosanoff, Steven Saddiq, Amna Ali Salas, Elisa Sallou, Olivier Shepherd, Rebecca Simon, Reinhard Sperling, Linda Spooner, William Staines, Daniel M. Steinbach, Delphine Stone, Kevin Stupka, Elia Teague, Jon W. Dayem Ullah, Abu Z. Wang, Jun Ware, Doreen Wong-Erasmus, Marie Youens-Clark, Ken Zadissa, Amonida Zhang, Shi-Jian Kasprzyk, Arek Nucleic Acids Res Web Server issue The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations. Oxford University Press 2015-07-01 2015-04-20 /pmc/articles/PMC4489294/ /pubmed/25897122 http://dx.doi.org/10.1093/nar/gkv350 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server issue
Smedley, Damian
Haider, Syed
Durinck, Steffen
Pandini, Luca
Provero, Paolo
Allen, James
Arnaiz, Olivier
Awedh, Mohammad Hamza
Baldock, Richard
Barbiera, Giulia
Bardou, Philippe
Beck, Tim
Blake, Andrew
Bonierbale, Merideth
Brookes, Anthony J.
Bucci, Gabriele
Buetti, Iwan
Burge, Sarah
Cabau, Cédric
Carlson, Joseph W.
Chelala, Claude
Chrysostomou, Charalambos
Cittaro, Davide
Collin, Olivier
Cordova, Raul
Cutts, Rosalind J.
Dassi, Erik
Genova, Alex Di
Djari, Anis
Esposito, Anthony
Estrella, Heather
Eyras, Eduardo
Fernandez-Banet, Julio
Forbes, Simon
Free, Robert C.
Fujisawa, Takatomo
Gadaleta, Emanuela
Garcia-Manteiga, Jose M.
Goodstein, David
Gray, Kristian
Guerra-Assunção, José Afonso
Haggarty, Bernard
Han, Dong-Jin
Han, Byung Woo
Harris, Todd
Harshbarger, Jayson
Hastings, Robert K.
Hayes, Richard D.
Hoede, Claire
Hu, Shen
Hu, Zhi-Liang
Hutchins, Lucie
Kan, Zhengyan
Kawaji, Hideya
Keliet, Aminah
Kerhornou, Arnaud
Kim, Sunghoon
Kinsella, Rhoda
Klopp, Christophe
Kong, Lei
Lawson, Daniel
Lazarevic, Dejan
Lee, Ji-Hyun
Letellier, Thomas
Li, Chuan-Yun
Lio, Pietro
Liu, Chu-Jun
Luo, Jie
Maass, Alejandro
Mariette, Jerome
Maurel, Thomas
Merella, Stefania
Mohamed, Azza Mostafa
Moreews, Francois
Nabihoudine, Ibounyamine
Ndegwa, Nelson
Noirot, Céline
Perez-Llamas, Cristian
Primig, Michael
Quattrone, Alessandro
Quesneville, Hadi
Rambaldi, Davide
Reecy, James
Riba, Michela
Rosanoff, Steven
Saddiq, Amna Ali
Salas, Elisa
Sallou, Olivier
Shepherd, Rebecca
Simon, Reinhard
Sperling, Linda
Spooner, William
Staines, Daniel M.
Steinbach, Delphine
Stone, Kevin
Stupka, Elia
Teague, Jon W.
Dayem Ullah, Abu Z.
Wang, Jun
Ware, Doreen
Wong-Erasmus, Marie
Youens-Clark, Ken
Zadissa, Amonida
Zhang, Shi-Jian
Kasprzyk, Arek
The BioMart community portal: an innovative alternative to large, centralized data repositories
title The BioMart community portal: an innovative alternative to large, centralized data repositories
title_full The BioMart community portal: an innovative alternative to large, centralized data repositories
title_fullStr The BioMart community portal: an innovative alternative to large, centralized data repositories
title_full_unstemmed The BioMart community portal: an innovative alternative to large, centralized data repositories
title_short The BioMart community portal: an innovative alternative to large, centralized data repositories
title_sort biomart community portal: an innovative alternative to large, centralized data repositories
topic Web Server issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294/
https://www.ncbi.nlm.nih.gov/pubmed/25897122
http://dx.doi.org/10.1093/nar/gkv350
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