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The BioMart community portal: an innovative alternative to large, centralized data repositories
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biologi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294/ https://www.ncbi.nlm.nih.gov/pubmed/25897122 http://dx.doi.org/10.1093/nar/gkv350 |
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author | Smedley, Damian Haider, Syed Durinck, Steffen Pandini, Luca Provero, Paolo Allen, James Arnaiz, Olivier Awedh, Mohammad Hamza Baldock, Richard Barbiera, Giulia Bardou, Philippe Beck, Tim Blake, Andrew Bonierbale, Merideth Brookes, Anthony J. Bucci, Gabriele Buetti, Iwan Burge, Sarah Cabau, Cédric Carlson, Joseph W. Chelala, Claude Chrysostomou, Charalambos Cittaro, Davide Collin, Olivier Cordova, Raul Cutts, Rosalind J. Dassi, Erik Genova, Alex Di Djari, Anis Esposito, Anthony Estrella, Heather Eyras, Eduardo Fernandez-Banet, Julio Forbes, Simon Free, Robert C. Fujisawa, Takatomo Gadaleta, Emanuela Garcia-Manteiga, Jose M. Goodstein, David Gray, Kristian Guerra-Assunção, José Afonso Haggarty, Bernard Han, Dong-Jin Han, Byung Woo Harris, Todd Harshbarger, Jayson Hastings, Robert K. Hayes, Richard D. Hoede, Claire Hu, Shen Hu, Zhi-Liang Hutchins, Lucie Kan, Zhengyan Kawaji, Hideya Keliet, Aminah Kerhornou, Arnaud Kim, Sunghoon Kinsella, Rhoda Klopp, Christophe Kong, Lei Lawson, Daniel Lazarevic, Dejan Lee, Ji-Hyun Letellier, Thomas Li, Chuan-Yun Lio, Pietro Liu, Chu-Jun Luo, Jie Maass, Alejandro Mariette, Jerome Maurel, Thomas Merella, Stefania Mohamed, Azza Mostafa Moreews, Francois Nabihoudine, Ibounyamine Ndegwa, Nelson Noirot, Céline Perez-Llamas, Cristian Primig, Michael Quattrone, Alessandro Quesneville, Hadi Rambaldi, Davide Reecy, James Riba, Michela Rosanoff, Steven Saddiq, Amna Ali Salas, Elisa Sallou, Olivier Shepherd, Rebecca Simon, Reinhard Sperling, Linda Spooner, William Staines, Daniel M. Steinbach, Delphine Stone, Kevin Stupka, Elia Teague, Jon W. Dayem Ullah, Abu Z. Wang, Jun Ware, Doreen Wong-Erasmus, Marie Youens-Clark, Ken Zadissa, Amonida Zhang, Shi-Jian Kasprzyk, Arek |
author_facet | Smedley, Damian Haider, Syed Durinck, Steffen Pandini, Luca Provero, Paolo Allen, James Arnaiz, Olivier Awedh, Mohammad Hamza Baldock, Richard Barbiera, Giulia Bardou, Philippe Beck, Tim Blake, Andrew Bonierbale, Merideth Brookes, Anthony J. Bucci, Gabriele Buetti, Iwan Burge, Sarah Cabau, Cédric Carlson, Joseph W. Chelala, Claude Chrysostomou, Charalambos Cittaro, Davide Collin, Olivier Cordova, Raul Cutts, Rosalind J. Dassi, Erik Genova, Alex Di Djari, Anis Esposito, Anthony Estrella, Heather Eyras, Eduardo Fernandez-Banet, Julio Forbes, Simon Free, Robert C. Fujisawa, Takatomo Gadaleta, Emanuela Garcia-Manteiga, Jose M. Goodstein, David Gray, Kristian Guerra-Assunção, José Afonso Haggarty, Bernard Han, Dong-Jin Han, Byung Woo Harris, Todd Harshbarger, Jayson Hastings, Robert K. Hayes, Richard D. Hoede, Claire Hu, Shen Hu, Zhi-Liang Hutchins, Lucie Kan, Zhengyan Kawaji, Hideya Keliet, Aminah Kerhornou, Arnaud Kim, Sunghoon Kinsella, Rhoda Klopp, Christophe Kong, Lei Lawson, Daniel Lazarevic, Dejan Lee, Ji-Hyun Letellier, Thomas Li, Chuan-Yun Lio, Pietro Liu, Chu-Jun Luo, Jie Maass, Alejandro Mariette, Jerome Maurel, Thomas Merella, Stefania Mohamed, Azza Mostafa Moreews, Francois Nabihoudine, Ibounyamine Ndegwa, Nelson Noirot, Céline Perez-Llamas, Cristian Primig, Michael Quattrone, Alessandro Quesneville, Hadi Rambaldi, Davide Reecy, James Riba, Michela Rosanoff, Steven Saddiq, Amna Ali Salas, Elisa Sallou, Olivier Shepherd, Rebecca Simon, Reinhard Sperling, Linda Spooner, William Staines, Daniel M. Steinbach, Delphine Stone, Kevin Stupka, Elia Teague, Jon W. Dayem Ullah, Abu Z. Wang, Jun Ware, Doreen Wong-Erasmus, Marie Youens-Clark, Ken Zadissa, Amonida Zhang, Shi-Jian Kasprzyk, Arek |
author_sort | Smedley, Damian |
collection | PubMed |
description | The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations. |
format | Online Article Text |
id | pubmed-4489294 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-44892942015-07-07 The BioMart community portal: an innovative alternative to large, centralized data repositories Smedley, Damian Haider, Syed Durinck, Steffen Pandini, Luca Provero, Paolo Allen, James Arnaiz, Olivier Awedh, Mohammad Hamza Baldock, Richard Barbiera, Giulia Bardou, Philippe Beck, Tim Blake, Andrew Bonierbale, Merideth Brookes, Anthony J. Bucci, Gabriele Buetti, Iwan Burge, Sarah Cabau, Cédric Carlson, Joseph W. Chelala, Claude Chrysostomou, Charalambos Cittaro, Davide Collin, Olivier Cordova, Raul Cutts, Rosalind J. Dassi, Erik Genova, Alex Di Djari, Anis Esposito, Anthony Estrella, Heather Eyras, Eduardo Fernandez-Banet, Julio Forbes, Simon Free, Robert C. Fujisawa, Takatomo Gadaleta, Emanuela Garcia-Manteiga, Jose M. Goodstein, David Gray, Kristian Guerra-Assunção, José Afonso Haggarty, Bernard Han, Dong-Jin Han, Byung Woo Harris, Todd Harshbarger, Jayson Hastings, Robert K. Hayes, Richard D. Hoede, Claire Hu, Shen Hu, Zhi-Liang Hutchins, Lucie Kan, Zhengyan Kawaji, Hideya Keliet, Aminah Kerhornou, Arnaud Kim, Sunghoon Kinsella, Rhoda Klopp, Christophe Kong, Lei Lawson, Daniel Lazarevic, Dejan Lee, Ji-Hyun Letellier, Thomas Li, Chuan-Yun Lio, Pietro Liu, Chu-Jun Luo, Jie Maass, Alejandro Mariette, Jerome Maurel, Thomas Merella, Stefania Mohamed, Azza Mostafa Moreews, Francois Nabihoudine, Ibounyamine Ndegwa, Nelson Noirot, Céline Perez-Llamas, Cristian Primig, Michael Quattrone, Alessandro Quesneville, Hadi Rambaldi, Davide Reecy, James Riba, Michela Rosanoff, Steven Saddiq, Amna Ali Salas, Elisa Sallou, Olivier Shepherd, Rebecca Simon, Reinhard Sperling, Linda Spooner, William Staines, Daniel M. Steinbach, Delphine Stone, Kevin Stupka, Elia Teague, Jon W. Dayem Ullah, Abu Z. Wang, Jun Ware, Doreen Wong-Erasmus, Marie Youens-Clark, Ken Zadissa, Amonida Zhang, Shi-Jian Kasprzyk, Arek Nucleic Acids Res Web Server issue The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations. Oxford University Press 2015-07-01 2015-04-20 /pmc/articles/PMC4489294/ /pubmed/25897122 http://dx.doi.org/10.1093/nar/gkv350 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Server issue Smedley, Damian Haider, Syed Durinck, Steffen Pandini, Luca Provero, Paolo Allen, James Arnaiz, Olivier Awedh, Mohammad Hamza Baldock, Richard Barbiera, Giulia Bardou, Philippe Beck, Tim Blake, Andrew Bonierbale, Merideth Brookes, Anthony J. Bucci, Gabriele Buetti, Iwan Burge, Sarah Cabau, Cédric Carlson, Joseph W. Chelala, Claude Chrysostomou, Charalambos Cittaro, Davide Collin, Olivier Cordova, Raul Cutts, Rosalind J. Dassi, Erik Genova, Alex Di Djari, Anis Esposito, Anthony Estrella, Heather Eyras, Eduardo Fernandez-Banet, Julio Forbes, Simon Free, Robert C. Fujisawa, Takatomo Gadaleta, Emanuela Garcia-Manteiga, Jose M. Goodstein, David Gray, Kristian Guerra-Assunção, José Afonso Haggarty, Bernard Han, Dong-Jin Han, Byung Woo Harris, Todd Harshbarger, Jayson Hastings, Robert K. Hayes, Richard D. Hoede, Claire Hu, Shen Hu, Zhi-Liang Hutchins, Lucie Kan, Zhengyan Kawaji, Hideya Keliet, Aminah Kerhornou, Arnaud Kim, Sunghoon Kinsella, Rhoda Klopp, Christophe Kong, Lei Lawson, Daniel Lazarevic, Dejan Lee, Ji-Hyun Letellier, Thomas Li, Chuan-Yun Lio, Pietro Liu, Chu-Jun Luo, Jie Maass, Alejandro Mariette, Jerome Maurel, Thomas Merella, Stefania Mohamed, Azza Mostafa Moreews, Francois Nabihoudine, Ibounyamine Ndegwa, Nelson Noirot, Céline Perez-Llamas, Cristian Primig, Michael Quattrone, Alessandro Quesneville, Hadi Rambaldi, Davide Reecy, James Riba, Michela Rosanoff, Steven Saddiq, Amna Ali Salas, Elisa Sallou, Olivier Shepherd, Rebecca Simon, Reinhard Sperling, Linda Spooner, William Staines, Daniel M. Steinbach, Delphine Stone, Kevin Stupka, Elia Teague, Jon W. Dayem Ullah, Abu Z. Wang, Jun Ware, Doreen Wong-Erasmus, Marie Youens-Clark, Ken Zadissa, Amonida Zhang, Shi-Jian Kasprzyk, Arek The BioMart community portal: an innovative alternative to large, centralized data repositories |
title | The BioMart community portal: an innovative alternative to large, centralized data repositories |
title_full | The BioMart community portal: an innovative alternative to large, centralized data repositories |
title_fullStr | The BioMart community portal: an innovative alternative to large, centralized data repositories |
title_full_unstemmed | The BioMart community portal: an innovative alternative to large, centralized data repositories |
title_short | The BioMart community portal: an innovative alternative to large, centralized data repositories |
title_sort | biomart community portal: an innovative alternative to large, centralized data repositories |
topic | Web Server issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294/ https://www.ncbi.nlm.nih.gov/pubmed/25897122 http://dx.doi.org/10.1093/nar/gkv350 |
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biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT letellierthomas biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT lichuanyun biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT liopietro biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT liuchujun biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT luojie biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT maassalejandro biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT mariettejerome biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT maurelthomas biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT merellastefania biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT mohamedazzamostafa biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT moreewsfrancois biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT nabihoudineibounyamine biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT ndegwanelson biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT noirotceline biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT perezllamascristian biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT primigmichael biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT quattronealessandro biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT quesnevillehadi biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT rambaldidavide biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT reecyjames biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT ribamichela biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT rosanoffsteven biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT saddiqamnaali biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT salaselisa biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT sallouolivier biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT shepherdrebecca biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT simonreinhard biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT sperlinglinda biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT spoonerwilliam biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT stainesdanielm biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT steinbachdelphine biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT stonekevin biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT stupkaelia biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT teaguejonw biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT dayemullahabuz biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT wangjun biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT waredoreen biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT wongerasmusmarie biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT youensclarkken biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT zadissaamonida biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT zhangshijian biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories AT kasprzykarek biomartcommunityportalaninnovativealternativetolargecentralizeddatarepositories |