Cargando…
Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs
Current preclinical screening methods do not adequately detect cardiotoxicity. Using human induced pluripotent stem cell-derived cardiomyocytes (iPS-CMs), more physiologically relevant preclinical or patient-specific screening to detect potential cardiotoxic effects of drug candidates may be possibl...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4490343/ https://www.ncbi.nlm.nih.gov/pubmed/26139150 http://dx.doi.org/10.1038/srep11817 |
_version_ | 1782379484851208192 |
---|---|
author | Lee, Eugene K. Kurokawa, Yosuke K. Tu, Robin George, Steven C. Khine, Michelle |
author_facet | Lee, Eugene K. Kurokawa, Yosuke K. Tu, Robin George, Steven C. Khine, Michelle |
author_sort | Lee, Eugene K. |
collection | PubMed |
description | Current preclinical screening methods do not adequately detect cardiotoxicity. Using human induced pluripotent stem cell-derived cardiomyocytes (iPS-CMs), more physiologically relevant preclinical or patient-specific screening to detect potential cardiotoxic effects of drug candidates may be possible. However, one of the persistent challenges for developing a high-throughput drug screening platform using iPS-CMs is the need to develop a simple and reliable method to measure key electrophysiological and contractile parameters. To address this need, we have developed a platform that combines machine learning paired with brightfield optical flow as a simple and robust tool that can automate the detection of cardiomyocyte drug effects. Using three cardioactive drugs of different mechanisms, including those with primarily electrophysiological effects, we demonstrate the general applicability of this screening method to detect subtle changes in cardiomyocyte contraction. Requiring only brightfield images of cardiomyocyte contractions, we detect changes in cardiomyocyte contraction comparable to – and even superior to – fluorescence readouts. This automated method serves as a widely applicable screening tool to characterize the effects of drugs on cardiomyocyte function. |
format | Online Article Text |
id | pubmed-4490343 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44903432015-07-08 Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs Lee, Eugene K. Kurokawa, Yosuke K. Tu, Robin George, Steven C. Khine, Michelle Sci Rep Article Current preclinical screening methods do not adequately detect cardiotoxicity. Using human induced pluripotent stem cell-derived cardiomyocytes (iPS-CMs), more physiologically relevant preclinical or patient-specific screening to detect potential cardiotoxic effects of drug candidates may be possible. However, one of the persistent challenges for developing a high-throughput drug screening platform using iPS-CMs is the need to develop a simple and reliable method to measure key electrophysiological and contractile parameters. To address this need, we have developed a platform that combines machine learning paired with brightfield optical flow as a simple and robust tool that can automate the detection of cardiomyocyte drug effects. Using three cardioactive drugs of different mechanisms, including those with primarily electrophysiological effects, we demonstrate the general applicability of this screening method to detect subtle changes in cardiomyocyte contraction. Requiring only brightfield images of cardiomyocyte contractions, we detect changes in cardiomyocyte contraction comparable to – and even superior to – fluorescence readouts. This automated method serves as a widely applicable screening tool to characterize the effects of drugs on cardiomyocyte function. Nature Publishing Group 2015-07-03 /pmc/articles/PMC4490343/ /pubmed/26139150 http://dx.doi.org/10.1038/srep11817 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Lee, Eugene K. Kurokawa, Yosuke K. Tu, Robin George, Steven C. Khine, Michelle Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
title | Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
title_full | Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
title_fullStr | Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
title_full_unstemmed | Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
title_short | Machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
title_sort | machine learning plus optical flow: a simple and sensitive method to detect cardioactive drugs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4490343/ https://www.ncbi.nlm.nih.gov/pubmed/26139150 http://dx.doi.org/10.1038/srep11817 |
work_keys_str_mv | AT leeeugenek machinelearningplusopticalflowasimpleandsensitivemethodtodetectcardioactivedrugs AT kurokawayosukek machinelearningplusopticalflowasimpleandsensitivemethodtodetectcardioactivedrugs AT turobin machinelearningplusopticalflowasimpleandsensitivemethodtodetectcardioactivedrugs AT georgestevenc machinelearningplusopticalflowasimpleandsensitivemethodtodetectcardioactivedrugs AT khinemichelle machinelearningplusopticalflowasimpleandsensitivemethodtodetectcardioactivedrugs |