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Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics

Spectroscopic techniques combined with chemometrics methods have proven to be effective tools for the discrimination of objects with similar properties. In this work, terahertz time-domain spectroscopy (THz-TDS) combined with discriminate analysis (DA) and principal component analysis (PCA) with der...

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Autores principales: Xu, Wendao, Xie, Lijuan, Ye, Zunzhong, Gao, Weilu, Yao, Yang, Chen, Min, Qin, Jianyuan, Ying, Yibin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495602/
https://www.ncbi.nlm.nih.gov/pubmed/26154950
http://dx.doi.org/10.1038/srep11115
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author Xu, Wendao
Xie, Lijuan
Ye, Zunzhong
Gao, Weilu
Yao, Yang
Chen, Min
Qin, Jianyuan
Ying, Yibin
author_facet Xu, Wendao
Xie, Lijuan
Ye, Zunzhong
Gao, Weilu
Yao, Yang
Chen, Min
Qin, Jianyuan
Ying, Yibin
author_sort Xu, Wendao
collection PubMed
description Spectroscopic techniques combined with chemometrics methods have proven to be effective tools for the discrimination of objects with similar properties. In this work, terahertz time-domain spectroscopy (THz-TDS) combined with discriminate analysis (DA) and principal component analysis (PCA) with derivative pretreatments was performed to differentiate transgenic rice (Hua Hui 1, containing the Cry1Ab protein) from its parent (Ming Hui 63). Both rice samples and the Cry1Ab protein were ground and pressed into pellets for terahertz (THz) measurements. The resulting time-domain spectra were transformed into frequency-domain spectra, and then, the transmittances of the rice and Cry1Ab protein were calculated. By applying the first derivative of the THz spectra in conjunction with the DA model, the discrimination of transgenic from non-transgenic rice was possible with accuracies up to 89.4% and 85.0% for the calibration set and validation set, respectively. The results indicated that THz spectroscopic techniques and chemometrics methods could be new feasible ways to differentiate transgenic rice.
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spelling pubmed-44956022015-07-13 Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics Xu, Wendao Xie, Lijuan Ye, Zunzhong Gao, Weilu Yao, Yang Chen, Min Qin, Jianyuan Ying, Yibin Sci Rep Article Spectroscopic techniques combined with chemometrics methods have proven to be effective tools for the discrimination of objects with similar properties. In this work, terahertz time-domain spectroscopy (THz-TDS) combined with discriminate analysis (DA) and principal component analysis (PCA) with derivative pretreatments was performed to differentiate transgenic rice (Hua Hui 1, containing the Cry1Ab protein) from its parent (Ming Hui 63). Both rice samples and the Cry1Ab protein were ground and pressed into pellets for terahertz (THz) measurements. The resulting time-domain spectra were transformed into frequency-domain spectra, and then, the transmittances of the rice and Cry1Ab protein were calculated. By applying the first derivative of the THz spectra in conjunction with the DA model, the discrimination of transgenic from non-transgenic rice was possible with accuracies up to 89.4% and 85.0% for the calibration set and validation set, respectively. The results indicated that THz spectroscopic techniques and chemometrics methods could be new feasible ways to differentiate transgenic rice. Nature Publishing Group 2015-07-08 /pmc/articles/PMC4495602/ /pubmed/26154950 http://dx.doi.org/10.1038/srep11115 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Xu, Wendao
Xie, Lijuan
Ye, Zunzhong
Gao, Weilu
Yao, Yang
Chen, Min
Qin, Jianyuan
Ying, Yibin
Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics
title Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics
title_full Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics
title_fullStr Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics
title_full_unstemmed Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics
title_short Discrimination of Transgenic Rice containing the Cry1Ab Protein using Terahertz Spectroscopy and Chemometrics
title_sort discrimination of transgenic rice containing the cry1ab protein using terahertz spectroscopy and chemometrics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495602/
https://www.ncbi.nlm.nih.gov/pubmed/26154950
http://dx.doi.org/10.1038/srep11115
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