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High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism

Field effect in cancer, also called “field cancerization”, attempts to explain the development of multiple primary tumors and locally recurrent cancer. The concept of field effect in cancer has been reinforced, since molecular alterations were found in tumor-adjacent tissues with normal histopatho-l...

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Autores principales: Assumpção, Monica B, Moreira, Fabiano C, Hamoy, Igor G, Magalhães, Leandro, Vidal, Amanda, Pereira, Adenilson, Burbano, Rommel, Khayat, André, Silva, Artur, Santos, Sidney, Demachki, Samia, Ribeiro-dos-Santos, Ândrea, Assumpção, Paulo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Libertas Academica 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4496000/
https://www.ncbi.nlm.nih.gov/pubmed/26244015
http://dx.doi.org/10.4137/BBI.S24066
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author Assumpção, Monica B
Moreira, Fabiano C
Hamoy, Igor G
Magalhães, Leandro
Vidal, Amanda
Pereira, Adenilson
Burbano, Rommel
Khayat, André
Silva, Artur
Santos, Sidney
Demachki, Samia
Ribeiro-dos-Santos, Ândrea
Assumpção, Paulo
author_facet Assumpção, Monica B
Moreira, Fabiano C
Hamoy, Igor G
Magalhães, Leandro
Vidal, Amanda
Pereira, Adenilson
Burbano, Rommel
Khayat, André
Silva, Artur
Santos, Sidney
Demachki, Samia
Ribeiro-dos-Santos, Ândrea
Assumpção, Paulo
author_sort Assumpção, Monica B
collection PubMed
description Field effect in cancer, also called “field cancerization”, attempts to explain the development of multiple primary tumors and locally recurrent cancer. The concept of field effect in cancer has been reinforced, since molecular alterations were found in tumor-adjacent tissues with normal histopatho-logical appearances. With the aim of investigating field effects in gastric cancer (GC), we conducted a high-throughput sequencing of the miRnome of four GC samples and their respective tumor-adjacent tissues and compared them with the miRnome of a gastric antrum sample from patients without GC, assuming that tumor-adjacent tissues could not be considered as normal tissues. The global number of miRNAs and read counts was highest in tumor samples, followed by tumor-adjacent and normal samples. Analyzing the miRNA expression profile of tumor-adjacent miRNA, hsa-miR-3131, hsa-miR-664, hsa-miR-483, and hsa-miR-150 were significantly downregulated compared with the antrum without tumor tissue (P-value < 0.01; fold-change <5). Additionally, hsa-miR-3131, hsa-miR-664, and hsa-miR-150 were downregulated (P-value < 0.001) in all paired samples of tumor and tumor-adjacent tissues, compared with antrum without tumor mucosa. The field effect was clearly demonstrated in gastric carcinogenesis by an epigenetics-based approach, and potential biomarkers of the GC field effect were identified. The elevated expression of miRNAs in adjacent tissues and tumors tissues may indicate that a cascade of events takes place during gastric carcinogenesis, reinforcing the notion of field effects. This phenomenon seems to be linked to DNA methylation patterns in cancer and suggests the involvement of an epigenetic network mechanism.
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spelling pubmed-44960002015-08-04 High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism Assumpção, Monica B Moreira, Fabiano C Hamoy, Igor G Magalhães, Leandro Vidal, Amanda Pereira, Adenilson Burbano, Rommel Khayat, André Silva, Artur Santos, Sidney Demachki, Samia Ribeiro-dos-Santos, Ândrea Assumpção, Paulo Bioinform Biol Insights Original Research Field effect in cancer, also called “field cancerization”, attempts to explain the development of multiple primary tumors and locally recurrent cancer. The concept of field effect in cancer has been reinforced, since molecular alterations were found in tumor-adjacent tissues with normal histopatho-logical appearances. With the aim of investigating field effects in gastric cancer (GC), we conducted a high-throughput sequencing of the miRnome of four GC samples and their respective tumor-adjacent tissues and compared them with the miRnome of a gastric antrum sample from patients without GC, assuming that tumor-adjacent tissues could not be considered as normal tissues. The global number of miRNAs and read counts was highest in tumor samples, followed by tumor-adjacent and normal samples. Analyzing the miRNA expression profile of tumor-adjacent miRNA, hsa-miR-3131, hsa-miR-664, hsa-miR-483, and hsa-miR-150 were significantly downregulated compared with the antrum without tumor tissue (P-value < 0.01; fold-change <5). Additionally, hsa-miR-3131, hsa-miR-664, and hsa-miR-150 were downregulated (P-value < 0.001) in all paired samples of tumor and tumor-adjacent tissues, compared with antrum without tumor mucosa. The field effect was clearly demonstrated in gastric carcinogenesis by an epigenetics-based approach, and potential biomarkers of the GC field effect were identified. The elevated expression of miRNAs in adjacent tissues and tumors tissues may indicate that a cascade of events takes place during gastric carcinogenesis, reinforcing the notion of field effects. This phenomenon seems to be linked to DNA methylation patterns in cancer and suggests the involvement of an epigenetic network mechanism. Libertas Academica 2015-07-06 /pmc/articles/PMC4496000/ /pubmed/26244015 http://dx.doi.org/10.4137/BBI.S24066 Text en © 2015 the author(s), publisher and licensee Libertas Academica Ltd. This is an open-access article distributed under the terms of the Creative Commons CC-BY-NC 3.0 License.
spellingShingle Original Research
Assumpção, Monica B
Moreira, Fabiano C
Hamoy, Igor G
Magalhães, Leandro
Vidal, Amanda
Pereira, Adenilson
Burbano, Rommel
Khayat, André
Silva, Artur
Santos, Sidney
Demachki, Samia
Ribeiro-dos-Santos, Ândrea
Assumpção, Paulo
High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
title High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
title_full High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
title_fullStr High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
title_full_unstemmed High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
title_short High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
title_sort high-throughput mirna sequencing reveals a field effect in gastric cancer and suggests an epigenetic network mechanism
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4496000/
https://www.ncbi.nlm.nih.gov/pubmed/26244015
http://dx.doi.org/10.4137/BBI.S24066
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