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Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China

Temperature is a predominant environmental factor affecting grass germination and distribution. Various thermal-germination models for prediction of grass seed germination have been reported, in which the relationship between temperature and germination were defined with kernel functions, such as qu...

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Autores principales: Pi, Erxu, Qu, Liqun, Tang, Xi, Peng, Tingting, Jiang, Bo, Guo, Jiangfeng, Lu, Hongfei, Du, Liqun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4496032/
https://www.ncbi.nlm.nih.gov/pubmed/26154163
http://dx.doi.org/10.1371/journal.pone.0131489
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author Pi, Erxu
Qu, Liqun
Tang, Xi
Peng, Tingting
Jiang, Bo
Guo, Jiangfeng
Lu, Hongfei
Du, Liqun
author_facet Pi, Erxu
Qu, Liqun
Tang, Xi
Peng, Tingting
Jiang, Bo
Guo, Jiangfeng
Lu, Hongfei
Du, Liqun
author_sort Pi, Erxu
collection PubMed
description Temperature is a predominant environmental factor affecting grass germination and distribution. Various thermal-germination models for prediction of grass seed germination have been reported, in which the relationship between temperature and germination were defined with kernel functions, such as quadratic or quintic function. However, their prediction accuracies warrant further improvements. The purpose of this study is to evaluate the relative prediction accuracies of genetic algorithm (GA) models, which are automatically parameterized with observed germination data. The seeds of five P. pratensis (Kentucky bluegrass, KB) cultivars were germinated under 36 day/night temperature regimes ranging from 5/5 to 40/40°C with 5°C increments. Results showed that optimal germination percentages of all five tested KB cultivars were observed under a fluctuating temperature regime of 20/25°C. Meanwhile, the constant temperature regimes (e.g., 5/5, 10/10, 15/15°C, etc.) suppressed the germination of all five cultivars. Furthermore, the back propagation artificial neural network (BP-ANN) algorithm was integrated to optimize temperature-germination response models from these observed germination data. It was found that integrations of GA-BP-ANN (back propagation aided genetic algorithm artificial neural network) significantly reduced the Root Mean Square Error (RMSE) values from 0.21~0.23 to 0.02~0.09. In an effort to provide a more reliable prediction of optimum sowing time for the tested KB cultivars in various regions in the country, the optimized GA-BP-ANN models were applied to map spatial and temporal germination percentages of blue grass cultivars in China. Our results demonstrate that the GA-BP-ANN model is a convenient and reliable option for constructing thermal-germination response models since it automates model parameterization and has excellent prediction accuracy.
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spelling pubmed-44960322015-07-15 Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China Pi, Erxu Qu, Liqun Tang, Xi Peng, Tingting Jiang, Bo Guo, Jiangfeng Lu, Hongfei Du, Liqun PLoS One Research Article Temperature is a predominant environmental factor affecting grass germination and distribution. Various thermal-germination models for prediction of grass seed germination have been reported, in which the relationship between temperature and germination were defined with kernel functions, such as quadratic or quintic function. However, their prediction accuracies warrant further improvements. The purpose of this study is to evaluate the relative prediction accuracies of genetic algorithm (GA) models, which are automatically parameterized with observed germination data. The seeds of five P. pratensis (Kentucky bluegrass, KB) cultivars were germinated under 36 day/night temperature regimes ranging from 5/5 to 40/40°C with 5°C increments. Results showed that optimal germination percentages of all five tested KB cultivars were observed under a fluctuating temperature regime of 20/25°C. Meanwhile, the constant temperature regimes (e.g., 5/5, 10/10, 15/15°C, etc.) suppressed the germination of all five cultivars. Furthermore, the back propagation artificial neural network (BP-ANN) algorithm was integrated to optimize temperature-germination response models from these observed germination data. It was found that integrations of GA-BP-ANN (back propagation aided genetic algorithm artificial neural network) significantly reduced the Root Mean Square Error (RMSE) values from 0.21~0.23 to 0.02~0.09. In an effort to provide a more reliable prediction of optimum sowing time for the tested KB cultivars in various regions in the country, the optimized GA-BP-ANN models were applied to map spatial and temporal germination percentages of blue grass cultivars in China. Our results demonstrate that the GA-BP-ANN model is a convenient and reliable option for constructing thermal-germination response models since it automates model parameterization and has excellent prediction accuracy. Public Library of Science 2015-07-08 /pmc/articles/PMC4496032/ /pubmed/26154163 http://dx.doi.org/10.1371/journal.pone.0131489 Text en © 2015 Pi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Pi, Erxu
Qu, Liqun
Tang, Xi
Peng, Tingting
Jiang, Bo
Guo, Jiangfeng
Lu, Hongfei
Du, Liqun
Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China
title Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China
title_full Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China
title_fullStr Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China
title_full_unstemmed Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China
title_short Application of Genetic Algorithm to Predict Optimal Sowing Region and Timing for Kentucky Bluegrass in China
title_sort application of genetic algorithm to predict optimal sowing region and timing for kentucky bluegrass in china
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4496032/
https://www.ncbi.nlm.nih.gov/pubmed/26154163
http://dx.doi.org/10.1371/journal.pone.0131489
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