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CGMD: An integrated database of cancer genes and markers

Integrating cancer genes and markers with experimental evidence might provide valuable information for the further investigation of crosstalk between tumor genes and markers in cancer biology. To achieve this objective, we developed a database known as the Cancer Gene Marker Database (CGMD), which i...

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Autores principales: Pradeepkiran, Jangampalli Adi, Sainath, Sri Bhashyam, Kramthi Kumar, Konidala, Balasubramanyam, Lokanada, Vidya Prabhakar, Kodali, Bhaskar, Matcha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498195/
https://www.ncbi.nlm.nih.gov/pubmed/26160459
http://dx.doi.org/10.1038/srep12035
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author Pradeepkiran, Jangampalli Adi
Sainath, Sri Bhashyam
Kramthi Kumar, Konidala
Balasubramanyam, Lokanada
Vidya Prabhakar, Kodali
Bhaskar, Matcha
author_facet Pradeepkiran, Jangampalli Adi
Sainath, Sri Bhashyam
Kramthi Kumar, Konidala
Balasubramanyam, Lokanada
Vidya Prabhakar, Kodali
Bhaskar, Matcha
author_sort Pradeepkiran, Jangampalli Adi
collection PubMed
description Integrating cancer genes and markers with experimental evidence might provide valuable information for the further investigation of crosstalk between tumor genes and markers in cancer biology. To achieve this objective, we developed a database known as the Cancer Gene Marker Database (CGMD), which integrates data on tumor genes and markers based on experimental evidence. The major goal of CGMD is to provide the following: 1) current systematic treatment approaches and recent advances in different cancer treatments; 2) the aggregation of different genes and markers by their molecular characteristics and pathway associations; and 3) free access to the data compiled by CGMD at http://cgmd.in/. The database consists of 309 genes and 206 markers, as well as a list of 40 different human cancers, with detailed descriptions of all characterized markers. CGMD provides complete cancer annotations and molecular descriptions of cancer genes and markers such as CpG islands, promoters, exons, PDB structures, active sites and domains.
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spelling pubmed-44981952015-07-13 CGMD: An integrated database of cancer genes and markers Pradeepkiran, Jangampalli Adi Sainath, Sri Bhashyam Kramthi Kumar, Konidala Balasubramanyam, Lokanada Vidya Prabhakar, Kodali Bhaskar, Matcha Sci Rep Article Integrating cancer genes and markers with experimental evidence might provide valuable information for the further investigation of crosstalk between tumor genes and markers in cancer biology. To achieve this objective, we developed a database known as the Cancer Gene Marker Database (CGMD), which integrates data on tumor genes and markers based on experimental evidence. The major goal of CGMD is to provide the following: 1) current systematic treatment approaches and recent advances in different cancer treatments; 2) the aggregation of different genes and markers by their molecular characteristics and pathway associations; and 3) free access to the data compiled by CGMD at http://cgmd.in/. The database consists of 309 genes and 206 markers, as well as a list of 40 different human cancers, with detailed descriptions of all characterized markers. CGMD provides complete cancer annotations and molecular descriptions of cancer genes and markers such as CpG islands, promoters, exons, PDB structures, active sites and domains. Nature Publishing Group 2015-07-10 /pmc/articles/PMC4498195/ /pubmed/26160459 http://dx.doi.org/10.1038/srep12035 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Pradeepkiran, Jangampalli Adi
Sainath, Sri Bhashyam
Kramthi Kumar, Konidala
Balasubramanyam, Lokanada
Vidya Prabhakar, Kodali
Bhaskar, Matcha
CGMD: An integrated database of cancer genes and markers
title CGMD: An integrated database of cancer genes and markers
title_full CGMD: An integrated database of cancer genes and markers
title_fullStr CGMD: An integrated database of cancer genes and markers
title_full_unstemmed CGMD: An integrated database of cancer genes and markers
title_short CGMD: An integrated database of cancer genes and markers
title_sort cgmd: an integrated database of cancer genes and markers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498195/
https://www.ncbi.nlm.nih.gov/pubmed/26160459
http://dx.doi.org/10.1038/srep12035
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