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The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
[Image: see text] Thiamine pyrophosphate (TPP), a derivative of vitamin B(1), is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498597/ https://www.ncbi.nlm.nih.gov/pubmed/26061898 http://dx.doi.org/10.1021/acs.biochem.5b00521 |
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author | Gibson, Marcus I. Brignole, Edward J. Pierce, Elizabeth Can, Mehmet Ragsdale, Stephen W. Drennan, Catherine L. |
author_facet | Gibson, Marcus I. Brignole, Edward J. Pierce, Elizabeth Can, Mehmet Ragsdale, Stephen W. Drennan, Catherine L. |
author_sort | Gibson, Marcus I. |
collection | PubMed |
description | [Image: see text] Thiamine pyrophosphate (TPP), a derivative of vitamin B(1), is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the synthesis of key metabolites and the reduction of N(2), H(+), and CO(2). We have determined the high-resolution (2.27 Å) crystal structure of the TPP-dependent oxalate oxidoreductase (OOR), an enzyme that allows microbes to grow on oxalate, a widely occurring dicarboxylic acid that is found in soil and freshwater and is responsible for kidney stone disease in humans. OOR catalyzes the anaerobic oxidation of oxalate, harvesting the low-potential electrons for use in anaerobic reduction and fixation of CO(2). We compare the OOR structure to that of the only other structurally characterized OFOR family member, pyruvate:ferredoxin oxidoreductase. This side-by-side structural analysis highlights the key similarities and differences that are relevant for the chemistry of this entire class of TPP-utilizing enzymes. |
format | Online Article Text |
id | pubmed-4498597 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-44985972016-06-10 The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism Gibson, Marcus I. Brignole, Edward J. Pierce, Elizabeth Can, Mehmet Ragsdale, Stephen W. Drennan, Catherine L. Biochemistry [Image: see text] Thiamine pyrophosphate (TPP), a derivative of vitamin B(1), is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the synthesis of key metabolites and the reduction of N(2), H(+), and CO(2). We have determined the high-resolution (2.27 Å) crystal structure of the TPP-dependent oxalate oxidoreductase (OOR), an enzyme that allows microbes to grow on oxalate, a widely occurring dicarboxylic acid that is found in soil and freshwater and is responsible for kidney stone disease in humans. OOR catalyzes the anaerobic oxidation of oxalate, harvesting the low-potential electrons for use in anaerobic reduction and fixation of CO(2). We compare the OOR structure to that of the only other structurally characterized OFOR family member, pyruvate:ferredoxin oxidoreductase. This side-by-side structural analysis highlights the key similarities and differences that are relevant for the chemistry of this entire class of TPP-utilizing enzymes. American Chemical Society 2015-06-10 2015-07-07 /pmc/articles/PMC4498597/ /pubmed/26061898 http://dx.doi.org/10.1021/acs.biochem.5b00521 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Gibson, Marcus I. Brignole, Edward J. Pierce, Elizabeth Can, Mehmet Ragsdale, Stephen W. Drennan, Catherine L. The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism |
title | The Structure of an Oxalate Oxidoreductase Provides
Insight into Microbial 2-Oxoacid Metabolism |
title_full | The Structure of an Oxalate Oxidoreductase Provides
Insight into Microbial 2-Oxoacid Metabolism |
title_fullStr | The Structure of an Oxalate Oxidoreductase Provides
Insight into Microbial 2-Oxoacid Metabolism |
title_full_unstemmed | The Structure of an Oxalate Oxidoreductase Provides
Insight into Microbial 2-Oxoacid Metabolism |
title_short | The Structure of an Oxalate Oxidoreductase Provides
Insight into Microbial 2-Oxoacid Metabolism |
title_sort | structure of an oxalate oxidoreductase provides
insight into microbial 2-oxoacid metabolism |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498597/ https://www.ncbi.nlm.nih.gov/pubmed/26061898 http://dx.doi.org/10.1021/acs.biochem.5b00521 |
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