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The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism

[Image: see text] Thiamine pyrophosphate (TPP), a derivative of vitamin B(1), is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the...

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Autores principales: Gibson, Marcus I., Brignole, Edward J., Pierce, Elizabeth, Can, Mehmet, Ragsdale, Stephen W., Drennan, Catherine L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2015
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498597/
https://www.ncbi.nlm.nih.gov/pubmed/26061898
http://dx.doi.org/10.1021/acs.biochem.5b00521
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author Gibson, Marcus I.
Brignole, Edward J.
Pierce, Elizabeth
Can, Mehmet
Ragsdale, Stephen W.
Drennan, Catherine L.
author_facet Gibson, Marcus I.
Brignole, Edward J.
Pierce, Elizabeth
Can, Mehmet
Ragsdale, Stephen W.
Drennan, Catherine L.
author_sort Gibson, Marcus I.
collection PubMed
description [Image: see text] Thiamine pyrophosphate (TPP), a derivative of vitamin B(1), is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the synthesis of key metabolites and the reduction of N(2), H(+), and CO(2). We have determined the high-resolution (2.27 Å) crystal structure of the TPP-dependent oxalate oxidoreductase (OOR), an enzyme that allows microbes to grow on oxalate, a widely occurring dicarboxylic acid that is found in soil and freshwater and is responsible for kidney stone disease in humans. OOR catalyzes the anaerobic oxidation of oxalate, harvesting the low-potential electrons for use in anaerobic reduction and fixation of CO(2). We compare the OOR structure to that of the only other structurally characterized OFOR family member, pyruvate:ferredoxin oxidoreductase. This side-by-side structural analysis highlights the key similarities and differences that are relevant for the chemistry of this entire class of TPP-utilizing enzymes.
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spelling pubmed-44985972016-06-10 The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism Gibson, Marcus I. Brignole, Edward J. Pierce, Elizabeth Can, Mehmet Ragsdale, Stephen W. Drennan, Catherine L. Biochemistry [Image: see text] Thiamine pyrophosphate (TPP), a derivative of vitamin B(1), is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the synthesis of key metabolites and the reduction of N(2), H(+), and CO(2). We have determined the high-resolution (2.27 Å) crystal structure of the TPP-dependent oxalate oxidoreductase (OOR), an enzyme that allows microbes to grow on oxalate, a widely occurring dicarboxylic acid that is found in soil and freshwater and is responsible for kidney stone disease in humans. OOR catalyzes the anaerobic oxidation of oxalate, harvesting the low-potential electrons for use in anaerobic reduction and fixation of CO(2). We compare the OOR structure to that of the only other structurally characterized OFOR family member, pyruvate:ferredoxin oxidoreductase. This side-by-side structural analysis highlights the key similarities and differences that are relevant for the chemistry of this entire class of TPP-utilizing enzymes. American Chemical Society 2015-06-10 2015-07-07 /pmc/articles/PMC4498597/ /pubmed/26061898 http://dx.doi.org/10.1021/acs.biochem.5b00521 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Gibson, Marcus I.
Brignole, Edward J.
Pierce, Elizabeth
Can, Mehmet
Ragsdale, Stephen W.
Drennan, Catherine L.
The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
title The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
title_full The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
title_fullStr The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
title_full_unstemmed The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
title_short The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism
title_sort structure of an oxalate oxidoreductase provides insight into microbial 2-oxoacid metabolism
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498597/
https://www.ncbi.nlm.nih.gov/pubmed/26061898
http://dx.doi.org/10.1021/acs.biochem.5b00521
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