An implementation of the Gillespie algorithm for RNA kinetics with logarithmic time update

In this paper I outline a fast method called KFOLD for implementing the Gillepie algorithm to stochastically sample the folding kinetics of an RNA molecule at single base-pair resolution. In the same fashion as the KINFOLD algorithm, which also uses the Gillespie algorithm to predict folding kinetic...

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Detalles Bibliográficos
Autor principal: Dykeman, Eric C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Computational Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499123/
https://www.ncbi.nlm.nih.gov/pubmed/25990741
http://dx.doi.org/10.1093/nar/gkv480

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499123/
https://www.ncbi.nlm.nih.gov/pubmed/25990741
http://dx.doi.org/10.1093/nar/gkv480

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