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Human Nail Clippings as a Source of DNA for Genetic Studies

Blood samples have traditionally been used as the main source of DNA for genetic analysis. However, this source can be difficult in terms of collection, transportation, and long-term storage. In this study, we investigated whether human nail clippings could be used as a source of DNA for SNP genotyp...

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Autores principales: Truong, Le, Park, Hannah Lui, Chang, Seong Sil, Ziogas, Argyrios, Neuhausen, Susan L., Wang, Sophia S., Bernstein, Leslie, Anton-Culver, Hoda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499506/
https://www.ncbi.nlm.nih.gov/pubmed/26180661
http://dx.doi.org/10.4236/ojepi.2015.51006
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author Truong, Le
Park, Hannah Lui
Chang, Seong Sil
Ziogas, Argyrios
Neuhausen, Susan L.
Wang, Sophia S.
Bernstein, Leslie
Anton-Culver, Hoda
author_facet Truong, Le
Park, Hannah Lui
Chang, Seong Sil
Ziogas, Argyrios
Neuhausen, Susan L.
Wang, Sophia S.
Bernstein, Leslie
Anton-Culver, Hoda
author_sort Truong, Le
collection PubMed
description Blood samples have traditionally been used as the main source of DNA for genetic analysis. However, this source can be difficult in terms of collection, transportation, and long-term storage. In this study, we investigated whether human nail clippings could be used as a source of DNA for SNP genotyping, null-allele detection, and whole-genome amplification. From extracted nail DNA, we achieved amplicons up to a length of ~400 bp and >96% concordance for SNP genotyping and 100% concordance for null-allele detection compared to DNA derived from matched blood samples. For whole-genome amplification, OmniPlex performed better than Multiple Displacement Amplification with a success rate of 89.3% and 76.8% for SNP genotyping and null-allele detection, respectively. Concordance was ~98% for both methods. When combined with OmniPlex whole-genome amplification, human nail clippings could potentially be used as an alternative to whole blood as a less invasive and more convenient source of DNA for genotyping studies.
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spelling pubmed-44995062015-08-01 Human Nail Clippings as a Source of DNA for Genetic Studies Truong, Le Park, Hannah Lui Chang, Seong Sil Ziogas, Argyrios Neuhausen, Susan L. Wang, Sophia S. Bernstein, Leslie Anton-Culver, Hoda Open J Epidemiol Article Blood samples have traditionally been used as the main source of DNA for genetic analysis. However, this source can be difficult in terms of collection, transportation, and long-term storage. In this study, we investigated whether human nail clippings could be used as a source of DNA for SNP genotyping, null-allele detection, and whole-genome amplification. From extracted nail DNA, we achieved amplicons up to a length of ~400 bp and >96% concordance for SNP genotyping and 100% concordance for null-allele detection compared to DNA derived from matched blood samples. For whole-genome amplification, OmniPlex performed better than Multiple Displacement Amplification with a success rate of 89.3% and 76.8% for SNP genotyping and null-allele detection, respectively. Concordance was ~98% for both methods. When combined with OmniPlex whole-genome amplification, human nail clippings could potentially be used as an alternative to whole blood as a less invasive and more convenient source of DNA for genotyping studies. 2015-02-01 /pmc/articles/PMC4499506/ /pubmed/26180661 http://dx.doi.org/10.4236/ojepi.2015.51006 Text en Copyright © 2015 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Truong, Le
Park, Hannah Lui
Chang, Seong Sil
Ziogas, Argyrios
Neuhausen, Susan L.
Wang, Sophia S.
Bernstein, Leslie
Anton-Culver, Hoda
Human Nail Clippings as a Source of DNA for Genetic Studies
title Human Nail Clippings as a Source of DNA for Genetic Studies
title_full Human Nail Clippings as a Source of DNA for Genetic Studies
title_fullStr Human Nail Clippings as a Source of DNA for Genetic Studies
title_full_unstemmed Human Nail Clippings as a Source of DNA for Genetic Studies
title_short Human Nail Clippings as a Source of DNA for Genetic Studies
title_sort human nail clippings as a source of dna for genetic studies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499506/
https://www.ncbi.nlm.nih.gov/pubmed/26180661
http://dx.doi.org/10.4236/ojepi.2015.51006
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