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Optimization of Parameter Selection for Partial Least Squares Model Development
In multivariate calibration using a spectral dataset, it is difficult to optimize nonsystematic parameters in a quantitative model, i.e., spectral pretreatment, latent factors and variable selection. In this study, we describe a novel and systematic approach that uses a processing trajectory to sele...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499800/ https://www.ncbi.nlm.nih.gov/pubmed/26166772 http://dx.doi.org/10.1038/srep11647 |
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author | Zhao, Na Wu, Zhi-sheng Zhang, Qiao Shi, Xin-yuan Ma, Qun Qiao, Yan-jiang |
author_facet | Zhao, Na Wu, Zhi-sheng Zhang, Qiao Shi, Xin-yuan Ma, Qun Qiao, Yan-jiang |
author_sort | Zhao, Na |
collection | PubMed |
description | In multivariate calibration using a spectral dataset, it is difficult to optimize nonsystematic parameters in a quantitative model, i.e., spectral pretreatment, latent factors and variable selection. In this study, we describe a novel and systematic approach that uses a processing trajectory to select three parameters including different spectral pretreatments, variable importance in the projection (VIP) for variable selection and latent factors in the Partial Least-Square (PLS) model. The root mean square errors of calibration (RMSEC), the root mean square errors of prediction (RMSEP), the ratio of standard error of prediction to standard deviation (RPD), and the determination coefficient of calibration (R(cal)(2)) and validation (R(pre)(2)) were simultaneously assessed to optimize the best modeling path. We used three different near-infrared (NIR) datasets, which illustrated that there was more than one modeling path to ensure good modeling. The PLS model optimizes modeling parameters step-by-step, but the robust model described here demonstrates better efficiency than other published papers. |
format | Online Article Text |
id | pubmed-4499800 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44998002015-07-17 Optimization of Parameter Selection for Partial Least Squares Model Development Zhao, Na Wu, Zhi-sheng Zhang, Qiao Shi, Xin-yuan Ma, Qun Qiao, Yan-jiang Sci Rep Article In multivariate calibration using a spectral dataset, it is difficult to optimize nonsystematic parameters in a quantitative model, i.e., spectral pretreatment, latent factors and variable selection. In this study, we describe a novel and systematic approach that uses a processing trajectory to select three parameters including different spectral pretreatments, variable importance in the projection (VIP) for variable selection and latent factors in the Partial Least-Square (PLS) model. The root mean square errors of calibration (RMSEC), the root mean square errors of prediction (RMSEP), the ratio of standard error of prediction to standard deviation (RPD), and the determination coefficient of calibration (R(cal)(2)) and validation (R(pre)(2)) were simultaneously assessed to optimize the best modeling path. We used three different near-infrared (NIR) datasets, which illustrated that there was more than one modeling path to ensure good modeling. The PLS model optimizes modeling parameters step-by-step, but the robust model described here demonstrates better efficiency than other published papers. Nature Publishing Group 2015-07-13 /pmc/articles/PMC4499800/ /pubmed/26166772 http://dx.doi.org/10.1038/srep11647 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Zhao, Na Wu, Zhi-sheng Zhang, Qiao Shi, Xin-yuan Ma, Qun Qiao, Yan-jiang Optimization of Parameter Selection for Partial Least Squares Model Development |
title | Optimization of Parameter Selection for Partial Least Squares Model Development |
title_full | Optimization of Parameter Selection for Partial Least Squares Model Development |
title_fullStr | Optimization of Parameter Selection for Partial Least Squares Model Development |
title_full_unstemmed | Optimization of Parameter Selection for Partial Least Squares Model Development |
title_short | Optimization of Parameter Selection for Partial Least Squares Model Development |
title_sort | optimization of parameter selection for partial least squares model development |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499800/ https://www.ncbi.nlm.nih.gov/pubmed/26166772 http://dx.doi.org/10.1038/srep11647 |
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