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Optimization of Parameter Selection for Partial Least Squares Model Development

In multivariate calibration using a spectral dataset, it is difficult to optimize nonsystematic parameters in a quantitative model, i.e., spectral pretreatment, latent factors and variable selection. In this study, we describe a novel and systematic approach that uses a processing trajectory to sele...

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Detalles Bibliográficos
Autores principales: Zhao, Na, Wu, Zhi-sheng, Zhang, Qiao, Shi, Xin-yuan, Ma, Qun, Qiao, Yan-jiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499800/
https://www.ncbi.nlm.nih.gov/pubmed/26166772
http://dx.doi.org/10.1038/srep11647
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author Zhao, Na
Wu, Zhi-sheng
Zhang, Qiao
Shi, Xin-yuan
Ma, Qun
Qiao, Yan-jiang
author_facet Zhao, Na
Wu, Zhi-sheng
Zhang, Qiao
Shi, Xin-yuan
Ma, Qun
Qiao, Yan-jiang
author_sort Zhao, Na
collection PubMed
description In multivariate calibration using a spectral dataset, it is difficult to optimize nonsystematic parameters in a quantitative model, i.e., spectral pretreatment, latent factors and variable selection. In this study, we describe a novel and systematic approach that uses a processing trajectory to select three parameters including different spectral pretreatments, variable importance in the projection (VIP) for variable selection and latent factors in the Partial Least-Square (PLS) model. The root mean square errors of calibration (RMSEC), the root mean square errors of prediction (RMSEP), the ratio of standard error of prediction to standard deviation (RPD), and the determination coefficient of calibration (R(cal)(2)) and validation (R(pre)(2)) were simultaneously assessed to optimize the best modeling path. We used three different near-infrared (NIR) datasets, which illustrated that there was more than one modeling path to ensure good modeling. The PLS model optimizes modeling parameters step-by-step, but the robust model described here demonstrates better efficiency than other published papers.
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spelling pubmed-44998002015-07-17 Optimization of Parameter Selection for Partial Least Squares Model Development Zhao, Na Wu, Zhi-sheng Zhang, Qiao Shi, Xin-yuan Ma, Qun Qiao, Yan-jiang Sci Rep Article In multivariate calibration using a spectral dataset, it is difficult to optimize nonsystematic parameters in a quantitative model, i.e., spectral pretreatment, latent factors and variable selection. In this study, we describe a novel and systematic approach that uses a processing trajectory to select three parameters including different spectral pretreatments, variable importance in the projection (VIP) for variable selection and latent factors in the Partial Least-Square (PLS) model. The root mean square errors of calibration (RMSEC), the root mean square errors of prediction (RMSEP), the ratio of standard error of prediction to standard deviation (RPD), and the determination coefficient of calibration (R(cal)(2)) and validation (R(pre)(2)) were simultaneously assessed to optimize the best modeling path. We used three different near-infrared (NIR) datasets, which illustrated that there was more than one modeling path to ensure good modeling. The PLS model optimizes modeling parameters step-by-step, but the robust model described here demonstrates better efficiency than other published papers. Nature Publishing Group 2015-07-13 /pmc/articles/PMC4499800/ /pubmed/26166772 http://dx.doi.org/10.1038/srep11647 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Zhao, Na
Wu, Zhi-sheng
Zhang, Qiao
Shi, Xin-yuan
Ma, Qun
Qiao, Yan-jiang
Optimization of Parameter Selection for Partial Least Squares Model Development
title Optimization of Parameter Selection for Partial Least Squares Model Development
title_full Optimization of Parameter Selection for Partial Least Squares Model Development
title_fullStr Optimization of Parameter Selection for Partial Least Squares Model Development
title_full_unstemmed Optimization of Parameter Selection for Partial Least Squares Model Development
title_short Optimization of Parameter Selection for Partial Least Squares Model Development
title_sort optimization of parameter selection for partial least squares model development
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499800/
https://www.ncbi.nlm.nih.gov/pubmed/26166772
http://dx.doi.org/10.1038/srep11647
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