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Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
PREMISE OF THE STUDY: Twenty microsatellite loci were developed for the federally threatened species Hexastylis naniflora (Aristolochiaceae) to examine genetic diversity and to distinguish this species from co-occurring congeners, H. heterophylla and H. minor. METHODS AND RESULTS: Next-generation se...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504726/ https://www.ncbi.nlm.nih.gov/pubmed/26191466 http://dx.doi.org/10.3732/apps.1500033 |
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author | Hamstead, Jacqueline W. Snider, Brandon L. Oaks, Robyn Fitzgerald, Evan Woodward, Jason Teat, Alyssa Hay, Nikolai M. Estep, Matt C. Murrell, Zack E. |
author_facet | Hamstead, Jacqueline W. Snider, Brandon L. Oaks, Robyn Fitzgerald, Evan Woodward, Jason Teat, Alyssa Hay, Nikolai M. Estep, Matt C. Murrell, Zack E. |
author_sort | Hamstead, Jacqueline W. |
collection | PubMed |
description | PREMISE OF THE STUDY: Twenty microsatellite loci were developed for the federally threatened species Hexastylis naniflora (Aristolochiaceae) to examine genetic diversity and to distinguish this species from co-occurring congeners, H. heterophylla and H. minor. METHODS AND RESULTS: Next-generation sequencing approaches were used to identify microsatellite loci and design primers. One hundred fifty-two primer pairs were screened for repeatability, and 20 of these were further characterized for polymorphism. In H. naniflora, the number of alleles identified for polymorphic loci ranged from two to 23 (mean ∼8.8), with a mean heterozygosity of 0.39. CONCLUSIONS: These 16 polymorphic primers for H. naniflora will be useful tools in species identification and quantifying genetic diversity within the genus. |
format | Online Article Text |
id | pubmed-4504726 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-45047262015-07-17 Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) Hamstead, Jacqueline W. Snider, Brandon L. Oaks, Robyn Fitzgerald, Evan Woodward, Jason Teat, Alyssa Hay, Nikolai M. Estep, Matt C. Murrell, Zack E. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Twenty microsatellite loci were developed for the federally threatened species Hexastylis naniflora (Aristolochiaceae) to examine genetic diversity and to distinguish this species from co-occurring congeners, H. heterophylla and H. minor. METHODS AND RESULTS: Next-generation sequencing approaches were used to identify microsatellite loci and design primers. One hundred fifty-two primer pairs were screened for repeatability, and 20 of these were further characterized for polymorphism. In H. naniflora, the number of alleles identified for polymorphic loci ranged from two to 23 (mean ∼8.8), with a mean heterozygosity of 0.39. CONCLUSIONS: These 16 polymorphic primers for H. naniflora will be useful tools in species identification and quantifying genetic diversity within the genus. Botanical Society of America 2015-07-07 /pmc/articles/PMC4504726/ /pubmed/26191466 http://dx.doi.org/10.3732/apps.1500033 Text en © 2015 Hamstead et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Hamstead, Jacqueline W. Snider, Brandon L. Oaks, Robyn Fitzgerald, Evan Woodward, Jason Teat, Alyssa Hay, Nikolai M. Estep, Matt C. Murrell, Zack E. Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) |
title | Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) |
title_full | Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) |
title_fullStr | Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) |
title_full_unstemmed | Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) |
title_short | Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) |
title_sort | sixteen polymorphic microsatellite markers for a federally threatened species, hexastylis naniflora (aristolochiaceae), and co-occurring congeners(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504726/ https://www.ncbi.nlm.nih.gov/pubmed/26191466 http://dx.doi.org/10.3732/apps.1500033 |
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