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Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)

PREMISE OF THE STUDY: Twenty microsatellite loci were developed for the federally threatened species Hexastylis naniflora (Aristolochiaceae) to examine genetic diversity and to distinguish this species from co-occurring congeners, H. heterophylla and H. minor. METHODS AND RESULTS: Next-generation se...

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Autores principales: Hamstead, Jacqueline W., Snider, Brandon L., Oaks, Robyn, Fitzgerald, Evan, Woodward, Jason, Teat, Alyssa, Hay, Nikolai M., Estep, Matt C., Murrell, Zack E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504726/
https://www.ncbi.nlm.nih.gov/pubmed/26191466
http://dx.doi.org/10.3732/apps.1500033
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author Hamstead, Jacqueline W.
Snider, Brandon L.
Oaks, Robyn
Fitzgerald, Evan
Woodward, Jason
Teat, Alyssa
Hay, Nikolai M.
Estep, Matt C.
Murrell, Zack E.
author_facet Hamstead, Jacqueline W.
Snider, Brandon L.
Oaks, Robyn
Fitzgerald, Evan
Woodward, Jason
Teat, Alyssa
Hay, Nikolai M.
Estep, Matt C.
Murrell, Zack E.
author_sort Hamstead, Jacqueline W.
collection PubMed
description PREMISE OF THE STUDY: Twenty microsatellite loci were developed for the federally threatened species Hexastylis naniflora (Aristolochiaceae) to examine genetic diversity and to distinguish this species from co-occurring congeners, H. heterophylla and H. minor. METHODS AND RESULTS: Next-generation sequencing approaches were used to identify microsatellite loci and design primers. One hundred fifty-two primer pairs were screened for repeatability, and 20 of these were further characterized for polymorphism. In H. naniflora, the number of alleles identified for polymorphic loci ranged from two to 23 (mean ∼8.8), with a mean heterozygosity of 0.39. CONCLUSIONS: These 16 polymorphic primers for H. naniflora will be useful tools in species identification and quantifying genetic diversity within the genus.
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spelling pubmed-45047262015-07-17 Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1) Hamstead, Jacqueline W. Snider, Brandon L. Oaks, Robyn Fitzgerald, Evan Woodward, Jason Teat, Alyssa Hay, Nikolai M. Estep, Matt C. Murrell, Zack E. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Twenty microsatellite loci were developed for the federally threatened species Hexastylis naniflora (Aristolochiaceae) to examine genetic diversity and to distinguish this species from co-occurring congeners, H. heterophylla and H. minor. METHODS AND RESULTS: Next-generation sequencing approaches were used to identify microsatellite loci and design primers. One hundred fifty-two primer pairs were screened for repeatability, and 20 of these were further characterized for polymorphism. In H. naniflora, the number of alleles identified for polymorphic loci ranged from two to 23 (mean ∼8.8), with a mean heterozygosity of 0.39. CONCLUSIONS: These 16 polymorphic primers for H. naniflora will be useful tools in species identification and quantifying genetic diversity within the genus. Botanical Society of America 2015-07-07 /pmc/articles/PMC4504726/ /pubmed/26191466 http://dx.doi.org/10.3732/apps.1500033 Text en © 2015 Hamstead et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Hamstead, Jacqueline W.
Snider, Brandon L.
Oaks, Robyn
Fitzgerald, Evan
Woodward, Jason
Teat, Alyssa
Hay, Nikolai M.
Estep, Matt C.
Murrell, Zack E.
Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
title Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
title_full Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
title_fullStr Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
title_full_unstemmed Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
title_short Sixteen polymorphic microsatellite markers for a federally threatened species, Hexastylis naniflora (Aristolochiaceae), and co-occurring congeners(1)
title_sort sixteen polymorphic microsatellite markers for a federally threatened species, hexastylis naniflora (aristolochiaceae), and co-occurring congeners(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504726/
https://www.ncbi.nlm.nih.gov/pubmed/26191466
http://dx.doi.org/10.3732/apps.1500033
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