Cargando…
A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.)
The description, identification and classification of organisms are the pillar in biodiversity and evolutionary studies. The fungal-like organism Saprolegnia contains important animal pathogens. However, its taxonomy is weak, making it difficult to perform further studies. This problem mainly arises...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4506062/ https://www.ncbi.nlm.nih.gov/pubmed/26186364 http://dx.doi.org/10.1371/journal.pone.0132999 |
_version_ | 1782381636716855296 |
---|---|
author | Sandoval-Sierra, Jose Vladimir Diéguez-Uribeondo, Javier |
author_facet | Sandoval-Sierra, Jose Vladimir Diéguez-Uribeondo, Javier |
author_sort | Sandoval-Sierra, Jose Vladimir |
collection | PubMed |
description | The description, identification and classification of organisms are the pillar in biodiversity and evolutionary studies. The fungal-like organism Saprolegnia contains important animal pathogens. However, its taxonomy is weak, making it difficult to perform further studies. This problem mainly arises from the unavailability of suitable holotypes. We propose a standardized protocol for describing Saprolegnia spp. that includes good cultural practices and proper holotype preservation. In order to illustrate this new proposal, we describe two species, Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov., based on the recently described molecular operational taxonomic units (MOTUs), phylogenetic relationships, and the analyses of morphological features. We show that they belong to two different MOTUs that are grouped into two sister clades. Morphologically, we find that S. racemosa exhibits a species-specific character, i.e., aggrupation of oogonia in racemes, while S. aenigmatica does not have any specific characters. Analyses of a combined set of characters, i.e., length and breadth of sporangia, length/breadth ratio (l/b) of oogonia, cyst and oospore diameter, and the number of oospores per oogomium, allow distinguishing these two species. To improve Saprolegnia taxonomy, we propose to incorporate into the protologue: (i) several isolates of the new species; (ii) the rDNA sequences to compare them to data-bases of Saprolegnia sequences of reference; (iii) a phylogenetic analysis to check relationships with other species; (iv) to preserve holotypes in absolute ethanol and to include lyophilized material from holotype; and (v) the ex-type as a pure culture from single-spore isolates stored in at least two different collections. |
format | Online Article Text |
id | pubmed-4506062 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45060622015-07-23 A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) Sandoval-Sierra, Jose Vladimir Diéguez-Uribeondo, Javier PLoS One Research Article The description, identification and classification of organisms are the pillar in biodiversity and evolutionary studies. The fungal-like organism Saprolegnia contains important animal pathogens. However, its taxonomy is weak, making it difficult to perform further studies. This problem mainly arises from the unavailability of suitable holotypes. We propose a standardized protocol for describing Saprolegnia spp. that includes good cultural practices and proper holotype preservation. In order to illustrate this new proposal, we describe two species, Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov., based on the recently described molecular operational taxonomic units (MOTUs), phylogenetic relationships, and the analyses of morphological features. We show that they belong to two different MOTUs that are grouped into two sister clades. Morphologically, we find that S. racemosa exhibits a species-specific character, i.e., aggrupation of oogonia in racemes, while S. aenigmatica does not have any specific characters. Analyses of a combined set of characters, i.e., length and breadth of sporangia, length/breadth ratio (l/b) of oogonia, cyst and oospore diameter, and the number of oospores per oogomium, allow distinguishing these two species. To improve Saprolegnia taxonomy, we propose to incorporate into the protologue: (i) several isolates of the new species; (ii) the rDNA sequences to compare them to data-bases of Saprolegnia sequences of reference; (iii) a phylogenetic analysis to check relationships with other species; (iv) to preserve holotypes in absolute ethanol and to include lyophilized material from holotype; and (v) the ex-type as a pure culture from single-spore isolates stored in at least two different collections. Public Library of Science 2015-07-17 /pmc/articles/PMC4506062/ /pubmed/26186364 http://dx.doi.org/10.1371/journal.pone.0132999 Text en © 2015 Sandoval-Sierra, Diéguez-Uribeondo http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Sandoval-Sierra, Jose Vladimir Diéguez-Uribeondo, Javier A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) |
title | A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) |
title_full | A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) |
title_fullStr | A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) |
title_full_unstemmed | A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) |
title_short | A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.) |
title_sort | comprehensive protocol for improving the description of saprolegniales (oomycota): two practical examples (saprolegnia aenigmatica sp. nov. and saprolegnia racemosa sp. nov.) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4506062/ https://www.ncbi.nlm.nih.gov/pubmed/26186364 http://dx.doi.org/10.1371/journal.pone.0132999 |
work_keys_str_mv | AT sandovalsierrajosevladimir acomprehensiveprotocolforimprovingthedescriptionofsaprolegnialesoomycotatwopracticalexamplessaprolegniaaenigmaticaspnovandsaprolegniaracemosaspnov AT dieguezuribeondojavier acomprehensiveprotocolforimprovingthedescriptionofsaprolegnialesoomycotatwopracticalexamplessaprolegniaaenigmaticaspnovandsaprolegniaracemosaspnov AT sandovalsierrajosevladimir comprehensiveprotocolforimprovingthedescriptionofsaprolegnialesoomycotatwopracticalexamplessaprolegniaaenigmaticaspnovandsaprolegniaracemosaspnov AT dieguezuribeondojavier comprehensiveprotocolforimprovingthedescriptionofsaprolegnialesoomycotatwopracticalexamplessaprolegniaaenigmaticaspnovandsaprolegniaracemosaspnov |