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Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids

This data article contains data related to the article “Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions” by Subramanian and Sarkar, Genomics, 2015 (10.1016/j.ygeno.2015.05.009). The data com...

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Detalles Bibliográficos
Autores principales: Subramanian, Abhishek, Rup Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510541/
https://www.ncbi.nlm.nih.gov/pubmed/26217801
http://dx.doi.org/10.1016/j.dib.2015.06.003
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author Subramanian, Abhishek
Rup Sarkar, Ram
author_facet Subramanian, Abhishek
Rup Sarkar, Ram
author_sort Subramanian, Abhishek
collection PubMed
description This data article contains data related to the article “Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions” by Subramanian and Sarkar, Genomics, 2015 (10.1016/j.ygeno.2015.05.009). The data comprises of sequence-based measures that quantify the effect of codon usage across genomes. The data thus generated represents computed values of codon usage indices like relative synonymous codon usage (RSCU), effective number of codons (ENC), and codon adaptation index (CAI), a set of single copy orthologous genes common to the 13 Trypanosomatids, and comparisons of CAI between genes of different functions. This forms a basis of comparison to infer the causes and consequences of codon usage bias in Leishmania and other Trypanosomatids.
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spelling pubmed-45105412015-07-27 Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids Subramanian, Abhishek Rup Sarkar, Ram Data Brief Data Article This data article contains data related to the article “Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions” by Subramanian and Sarkar, Genomics, 2015 (10.1016/j.ygeno.2015.05.009). The data comprises of sequence-based measures that quantify the effect of codon usage across genomes. The data thus generated represents computed values of codon usage indices like relative synonymous codon usage (RSCU), effective number of codons (ENC), and codon adaptation index (CAI), a set of single copy orthologous genes common to the 13 Trypanosomatids, and comparisons of CAI between genes of different functions. This forms a basis of comparison to infer the causes and consequences of codon usage bias in Leishmania and other Trypanosomatids. Elsevier 2015-06-18 /pmc/articles/PMC4510541/ /pubmed/26217801 http://dx.doi.org/10.1016/j.dib.2015.06.003 Text en © 2015 Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Subramanian, Abhishek
Rup Sarkar, Ram
Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
title Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
title_full Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
title_fullStr Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
title_full_unstemmed Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
title_short Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
title_sort data in support of large scale comparative codon usage analysis in leishmania and trypanosomatids
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510541/
https://www.ncbi.nlm.nih.gov/pubmed/26217801
http://dx.doi.org/10.1016/j.dib.2015.06.003
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