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Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids
This data article contains data related to the article “Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions” by Subramanian and Sarkar, Genomics, 2015 (10.1016/j.ygeno.2015.05.009). The data com...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510541/ https://www.ncbi.nlm.nih.gov/pubmed/26217801 http://dx.doi.org/10.1016/j.dib.2015.06.003 |
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author | Subramanian, Abhishek Rup Sarkar, Ram |
author_facet | Subramanian, Abhishek Rup Sarkar, Ram |
author_sort | Subramanian, Abhishek |
collection | PubMed |
description | This data article contains data related to the article “Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions” by Subramanian and Sarkar, Genomics, 2015 (10.1016/j.ygeno.2015.05.009). The data comprises of sequence-based measures that quantify the effect of codon usage across genomes. The data thus generated represents computed values of codon usage indices like relative synonymous codon usage (RSCU), effective number of codons (ENC), and codon adaptation index (CAI), a set of single copy orthologous genes common to the 13 Trypanosomatids, and comparisons of CAI between genes of different functions. This forms a basis of comparison to infer the causes and consequences of codon usage bias in Leishmania and other Trypanosomatids. |
format | Online Article Text |
id | pubmed-4510541 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-45105412015-07-27 Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids Subramanian, Abhishek Rup Sarkar, Ram Data Brief Data Article This data article contains data related to the article “Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions” by Subramanian and Sarkar, Genomics, 2015 (10.1016/j.ygeno.2015.05.009). The data comprises of sequence-based measures that quantify the effect of codon usage across genomes. The data thus generated represents computed values of codon usage indices like relative synonymous codon usage (RSCU), effective number of codons (ENC), and codon adaptation index (CAI), a set of single copy orthologous genes common to the 13 Trypanosomatids, and comparisons of CAI between genes of different functions. This forms a basis of comparison to infer the causes and consequences of codon usage bias in Leishmania and other Trypanosomatids. Elsevier 2015-06-18 /pmc/articles/PMC4510541/ /pubmed/26217801 http://dx.doi.org/10.1016/j.dib.2015.06.003 Text en © 2015 Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Subramanian, Abhishek Rup Sarkar, Ram Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids |
title | Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids |
title_full | Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids |
title_fullStr | Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids |
title_full_unstemmed | Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids |
title_short | Data in support of large scale comparative codon usage analysis in Leishmania and Trypanosomatids |
title_sort | data in support of large scale comparative codon usage analysis in leishmania and trypanosomatids |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510541/ https://www.ncbi.nlm.nih.gov/pubmed/26217801 http://dx.doi.org/10.1016/j.dib.2015.06.003 |
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