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Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota

To date, genome sequences (complete or in draft form) from only six baeocytous cyanobacteria in four genera have been reported: Xenococcus, Chroococcidiopsis, Pleurocapsa, and Stanieria. To expand our knowledge on the diversity of baeocytous cyanobacteria, this study sequenced the genome of GI1, whi...

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Autores principales: Yu, Chun-Hui, Lu, Chung-Kuang, Su, Huang-Ming, Chiang, Tzen-Yuh, Hwang, Chi-Chuan, Liu, Tsunglin, Chen, Yi-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510999/
https://www.ncbi.nlm.nih.gov/pubmed/26203339
http://dx.doi.org/10.1186/s40793-015-0011-3
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author Yu, Chun-Hui
Lu, Chung-Kuang
Su, Huang-Ming
Chiang, Tzen-Yuh
Hwang, Chi-Chuan
Liu, Tsunglin
Chen, Yi-Min
author_facet Yu, Chun-Hui
Lu, Chung-Kuang
Su, Huang-Ming
Chiang, Tzen-Yuh
Hwang, Chi-Chuan
Liu, Tsunglin
Chen, Yi-Min
author_sort Yu, Chun-Hui
collection PubMed
description To date, genome sequences (complete or in draft form) from only six baeocytous cyanobacteria in four genera have been reported: Xenococcus, Chroococcidiopsis, Pleurocapsa, and Stanieria. To expand our knowledge on the diversity of baeocytous cyanobacteria, this study sequenced the genome of GI1, which is a Myxosarcina-like baeocytous cyanobacterium. GI1 is of interest not only because of its phylogenetic niche, but also because it is a cyanobiont isolated from the marine cyanobacteriosponge Terpios hoshinota, which has been shown to cause the death of corals. The ~7 Mb draft GI1 genome contains 6,891 protein-coding genes and 62 RNA genes. A comparison of genomes among the sequenced baeocytous cyanobacterial strains revealed the existence or absence of numerous discrete genes involved in nitrogen metabolism. It will be interesting to determine whether these genes are important for cyanobacterial adaptations and interactions between cyanobionts and their marine sponge hosts.
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spelling pubmed-45109992015-07-23 Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota Yu, Chun-Hui Lu, Chung-Kuang Su, Huang-Ming Chiang, Tzen-Yuh Hwang, Chi-Chuan Liu, Tsunglin Chen, Yi-Min Stand Genomic Sci Extended Genome Report To date, genome sequences (complete or in draft form) from only six baeocytous cyanobacteria in four genera have been reported: Xenococcus, Chroococcidiopsis, Pleurocapsa, and Stanieria. To expand our knowledge on the diversity of baeocytous cyanobacteria, this study sequenced the genome of GI1, which is a Myxosarcina-like baeocytous cyanobacterium. GI1 is of interest not only because of its phylogenetic niche, but also because it is a cyanobiont isolated from the marine cyanobacteriosponge Terpios hoshinota, which has been shown to cause the death of corals. The ~7 Mb draft GI1 genome contains 6,891 protein-coding genes and 62 RNA genes. A comparison of genomes among the sequenced baeocytous cyanobacterial strains revealed the existence or absence of numerous discrete genes involved in nitrogen metabolism. It will be interesting to determine whether these genes are important for cyanobacterial adaptations and interactions between cyanobionts and their marine sponge hosts. BioMed Central 2015-05-27 /pmc/articles/PMC4510999/ /pubmed/26203339 http://dx.doi.org/10.1186/s40793-015-0011-3 Text en Copyright © 2015 Yu et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Yu, Chun-Hui
Lu, Chung-Kuang
Su, Huang-Ming
Chiang, Tzen-Yuh
Hwang, Chi-Chuan
Liu, Tsunglin
Chen, Yi-Min
Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota
title Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota
title_full Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota
title_fullStr Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota
title_full_unstemmed Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota
title_short Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota
title_sort draft genome of myxosarcina sp. strain gi1, a baeocytous cyanobacterium associated with the marine sponge terpios hoshinota
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510999/
https://www.ncbi.nlm.nih.gov/pubmed/26203339
http://dx.doi.org/10.1186/s40793-015-0011-3
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