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Meeting report: Identifying practical applications of ontologies for biodiversity informatics

This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal here to express terms in Darwin Core and Audubon Core, where class constructs have been hist...

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Autores principales: Deck, John, Guralnick, Robert, Walls, Ramona, Blum, Stanley, Haendel, Melissa, Matsunaga, Andréa, Wieczorek, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511409/
http://dx.doi.org/10.1186/s40793-015-0014-0
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author Deck, John
Guralnick, Robert
Walls, Ramona
Blum, Stanley
Haendel, Melissa
Matsunaga, Andréa
Wieczorek, John
author_facet Deck, John
Guralnick, Robert
Walls, Ramona
Blum, Stanley
Haendel, Melissa
Matsunaga, Andréa
Wieczorek, John
author_sort Deck, John
collection PubMed
description This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal here to express terms in Darwin Core and Audubon Core, where class constructs have been historically underspecified, into a Biological Collections Ontology (BCO) framework. For the purposes of this workshop, the BCO provided the context for fully defining classes as well as object and data properties, including domain and range information, for both the Darwin Core and Audubon Core. In addition, the workshop participants reviewed technical specifications and approaches for annotating instance data with BCO terms. Finally, we laid out proposed activities for the next 3 to 18 months to continue this work.
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spelling pubmed-45114092015-07-23 Meeting report: Identifying practical applications of ontologies for biodiversity informatics Deck, John Guralnick, Robert Walls, Ramona Blum, Stanley Haendel, Melissa Matsunaga, Andréa Wieczorek, John Stand Genomic Sci Meeting Report This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal here to express terms in Darwin Core and Audubon Core, where class constructs have been historically underspecified, into a Biological Collections Ontology (BCO) framework. For the purposes of this workshop, the BCO provided the context for fully defining classes as well as object and data properties, including domain and range information, for both the Darwin Core and Audubon Core. In addition, the workshop participants reviewed technical specifications and approaches for annotating instance data with BCO terms. Finally, we laid out proposed activities for the next 3 to 18 months to continue this work. BioMed Central 2015-05-17 /pmc/articles/PMC4511409/ http://dx.doi.org/10.1186/s40793-015-0014-0 Text en Copyright © 2015 Deck et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Meeting Report
Deck, John
Guralnick, Robert
Walls, Ramona
Blum, Stanley
Haendel, Melissa
Matsunaga, Andréa
Wieczorek, John
Meeting report: Identifying practical applications of ontologies for biodiversity informatics
title Meeting report: Identifying practical applications of ontologies for biodiversity informatics
title_full Meeting report: Identifying practical applications of ontologies for biodiversity informatics
title_fullStr Meeting report: Identifying practical applications of ontologies for biodiversity informatics
title_full_unstemmed Meeting report: Identifying practical applications of ontologies for biodiversity informatics
title_short Meeting report: Identifying practical applications of ontologies for biodiversity informatics
title_sort meeting report: identifying practical applications of ontologies for biodiversity informatics
topic Meeting Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511409/
http://dx.doi.org/10.1186/s40793-015-0014-0
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