High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and ann...

Descripción completa

Detalles Bibliográficos
Autores principales: De Meyer, Sofie E, Fabiano, Elena, Tian, Rui, Van Berkum, Peter, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia N, Pati, Amrita, Woyke, Tanja, Howieson, John, Kyrpides, Nikos C, Reeve, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511410/
https://www.ncbi.nlm.nih.gov/pubmed/26203327
http://dx.doi.org/10.1186/1944-3277-10-13
_version_ 1782382329598050304
author De Meyer, Sofie E
Fabiano, Elena
Tian, Rui
Van Berkum, Peter
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia N
Pati, Amrita
Woyke, Tanja
Howieson, John
Kyrpides, Nikos C
Reeve, Wayne
author_facet De Meyer, Sofie E
Fabiano, Elena
Tian, Rui
Van Berkum, Peter
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia N
Pati, Amrita
Woyke, Tanja
Howieson, John
Kyrpides, Nikos C
Reeve, Wayne
author_sort De Meyer, Sofie E
collection PubMed
description Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. The 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.
format Online
Article
Text
id pubmed-4511410
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-45114102015-07-23 High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512 De Meyer, Sofie E Fabiano, Elena Tian, Rui Van Berkum, Peter Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia N Pati, Amrita Woyke, Tanja Howieson, John Kyrpides, Nikos C Reeve, Wayne Stand Genomic Sci Short Genome Report Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. The 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal. BioMed Central 2015-04-11 /pmc/articles/PMC4511410/ /pubmed/26203327 http://dx.doi.org/10.1186/1944-3277-10-13 Text en Copyright © 2015 De Meyer et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
De Meyer, Sofie E
Fabiano, Elena
Tian, Rui
Van Berkum, Peter
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia N
Pati, Amrita
Woyke, Tanja
Howieson, John
Kyrpides, Nikos C
Reeve, Wayne
High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
title High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
title_full High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
title_fullStr High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
title_full_unstemmed High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
title_short High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
title_sort high-quality permanent draft genome sequence of the parapiptadenia rigida-nodulating cupriavidus sp. strain uypr2.512
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511410/
https://www.ncbi.nlm.nih.gov/pubmed/26203327
http://dx.doi.org/10.1186/1944-3277-10-13
work_keys_str_mv AT demeyersofiee highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT fabianoelena highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT tianrui highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT vanberkumpeter highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT seshadrirekha highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT reddytbk highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT markowitzvictor highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT ivanovanatalian highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT patiamrita highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT woyketanja highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT howiesonjohn highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT kyrpidesnikosc highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512
AT reevewayne highqualitypermanentdraftgenomesequenceoftheparapiptadeniarigidanodulatingcupriavidusspstrainuypr2512

Ejemplares similares