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Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards
Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for “Reporting” and “Serving”...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511511/ https://www.ncbi.nlm.nih.gov/pubmed/26203332 http://dx.doi.org/10.1186/s40793-015-0001-5 |
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author | ten Hoopen, Petra Pesant, Stéphane Kottmann, Renzo Kopf, Anna Bicak, Mesude Claus, Simon Deneudt, Klaas Borremans, Catherine Thijsse, Peter Dekeyzer, Stefanie Schaap, Dick MA Bowler, Chris Glöckner, Frank Oliver Cochrane, Guy |
author_facet | ten Hoopen, Petra Pesant, Stéphane Kottmann, Renzo Kopf, Anna Bicak, Mesude Claus, Simon Deneudt, Klaas Borremans, Catherine Thijsse, Peter Dekeyzer, Stefanie Schaap, Dick MA Bowler, Chris Glöckner, Frank Oliver Cochrane, Guy |
author_sort | ten Hoopen, Petra |
collection | PubMed |
description | Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for “Reporting” and “Serving” data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be discovered and explored in data repositories. The M2B3 Standards were developed by the European project Micro B3, funded under 7(th) Framework Programme “Ocean of Tomorrow”, and were first used with the Ocean Sampling Day initiative. We believe that these standards have value in broader marine science. |
format | Online Article Text |
id | pubmed-4511511 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45115112015-07-23 Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards ten Hoopen, Petra Pesant, Stéphane Kottmann, Renzo Kopf, Anna Bicak, Mesude Claus, Simon Deneudt, Klaas Borremans, Catherine Thijsse, Peter Dekeyzer, Stefanie Schaap, Dick MA Bowler, Chris Glöckner, Frank Oliver Cochrane, Guy Stand Genomic Sci Commentary Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for “Reporting” and “Serving” data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be discovered and explored in data repositories. The M2B3 Standards were developed by the European project Micro B3, funded under 7(th) Framework Programme “Ocean of Tomorrow”, and were first used with the Ocean Sampling Day initiative. We believe that these standards have value in broader marine science. BioMed Central 2015-05-08 /pmc/articles/PMC4511511/ /pubmed/26203332 http://dx.doi.org/10.1186/s40793-015-0001-5 Text en Copyright © 2015 ten Hoopen et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Commentary ten Hoopen, Petra Pesant, Stéphane Kottmann, Renzo Kopf, Anna Bicak, Mesude Claus, Simon Deneudt, Klaas Borremans, Catherine Thijsse, Peter Dekeyzer, Stefanie Schaap, Dick MA Bowler, Chris Glöckner, Frank Oliver Cochrane, Guy Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards |
title | Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards |
title_full | Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards |
title_fullStr | Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards |
title_full_unstemmed | Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards |
title_short | Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards |
title_sort | marine microbial biodiversity, bioinformatics and biotechnology (m2b3) data reporting and service standards |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511511/ https://www.ncbi.nlm.nih.gov/pubmed/26203332 http://dx.doi.org/10.1186/s40793-015-0001-5 |
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