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High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass

Brachymonas chironomi strain AIMA4(T) (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the class Betaproteobacteria. This species was isolated from a chironomid (Diptera; Chironomidae) egg mass...

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Autores principales: Laviad, Sivan, Lapidus, Alla, Han, James, Haynes, Matthew, Reddy, TBK, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N, Mavromatis, Konstantinos, Lang, Elke, Rohde, Manfred, Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C, Halpern, Malka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511610/
https://www.ncbi.nlm.nih.gov/pubmed/26203340
http://dx.doi.org/10.1186/s40793-015-0010-4
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author Laviad, Sivan
Lapidus, Alla
Han, James
Haynes, Matthew
Reddy, TBK
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Mavromatis, Konstantinos
Lang, Elke
Rohde, Manfred
Markowitz, Victor
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Halpern, Malka
author_facet Laviad, Sivan
Lapidus, Alla
Han, James
Haynes, Matthew
Reddy, TBK
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Mavromatis, Konstantinos
Lang, Elke
Rohde, Manfred
Markowitz, Victor
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Halpern, Malka
author_sort Laviad, Sivan
collection PubMed
description Brachymonas chironomi strain AIMA4(T) (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the class Betaproteobacteria. This species was isolated from a chironomid (Diptera; Chironomidae) egg mass, sampled from a waste stabilization pond in northern Israel. Phylogenetic analysis based on the 16S rRNA gene sequences placed strain AIMA4(T) in the genus Brachymonas. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 63.5%. The chromosome length is 2,509,395 bp. It encodes 2,382 proteins and 68 RNA genes. Brachymonas chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.
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spelling pubmed-45116102015-07-23 High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass Laviad, Sivan Lapidus, Alla Han, James Haynes, Matthew Reddy, TBK Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Mavromatis, Konstantinos Lang, Elke Rohde, Manfred Markowitz, Victor Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C Halpern, Malka Stand Genomic Sci Short Genome Report Brachymonas chironomi strain AIMA4(T) (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the class Betaproteobacteria. This species was isolated from a chironomid (Diptera; Chironomidae) egg mass, sampled from a waste stabilization pond in northern Israel. Phylogenetic analysis based on the 16S rRNA gene sequences placed strain AIMA4(T) in the genus Brachymonas. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 63.5%. The chromosome length is 2,509,395 bp. It encodes 2,382 proteins and 68 RNA genes. Brachymonas chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project. BioMed Central 2015-05-27 /pmc/articles/PMC4511610/ /pubmed/26203340 http://dx.doi.org/10.1186/s40793-015-0010-4 Text en Copyright © 2015 Laviad et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Laviad, Sivan
Lapidus, Alla
Han, James
Haynes, Matthew
Reddy, TBK
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Mavromatis, Konstantinos
Lang, Elke
Rohde, Manfred
Markowitz, Victor
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Halpern, Malka
High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass
title High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass
title_full High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass
title_fullStr High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass
title_full_unstemmed High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass
title_short High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass
title_sort high quality draft genome sequence of brachymonas chironomi aima4(t) (dsm 19884(t)) isolated from a chironomus sp. egg mass
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511610/
https://www.ncbi.nlm.nih.gov/pubmed/26203340
http://dx.doi.org/10.1186/s40793-015-0010-4
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