High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York

Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson City, New York. Here we describe the features of Bradyrhizobium sp. Th.b2, together with high-quality pe...

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Autores principales: Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed N, Baeshen, Nabih A, Kyrpides, Nikos, Reeve, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511635/
https://www.ncbi.nlm.nih.gov/pubmed/26203336
http://dx.doi.org/10.1186/s40793-015-0008-y
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author Tian, Rui
Parker, Matthew
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Baeshen, Mohammed N
Baeshen, Nabih A
Kyrpides, Nikos
Reeve, Wayne
author_facet Tian, Rui
Parker, Matthew
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Baeshen, Mohammed N
Baeshen, Nabih A
Kyrpides, Nikos
Reeve, Wayne
author_sort Tian, Rui
collection PubMed
description Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson City, New York. Here we describe the features of Bradyrhizobium sp. Th.b2, together with high-quality permanent draft genome sequence information and annotation. The 10,118,060 high-quality draft genome is arranged in 266 scaffolds of 274 contigs, contains 9,809 protein-coding genes and 108 RNA-only encoding genes. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.
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spelling pubmed-45116352015-07-23 High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York Tian, Rui Parker, Matthew Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Baeshen, Mohammed N Baeshen, Nabih A Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson City, New York. Here we describe the features of Bradyrhizobium sp. Th.b2, together with high-quality permanent draft genome sequence information and annotation. The 10,118,060 high-quality draft genome is arranged in 266 scaffolds of 274 contigs, contains 9,809 protein-coding genes and 108 RNA-only encoding genes. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. BioMed Central 2015-05-16 /pmc/articles/PMC4511635/ /pubmed/26203336 http://dx.doi.org/10.1186/s40793-015-0008-y Text en Copyright © 2015 Tian et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Tian, Rui
Parker, Matthew
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Baeshen, Mohammed N
Baeshen, Nabih A
Kyrpides, Nikos
Reeve, Wayne
High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
title High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
title_full High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
title_fullStr High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
title_full_unstemmed High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
title_short High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
title_sort high-quality permanent draft genome sequence of bradyrhizobium sp. th.b2, a microsymbiont of amphicarpaea bracteata collected in johnson city, new york
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511635/
https://www.ncbi.nlm.nih.gov/pubmed/26203336
http://dx.doi.org/10.1186/s40793-015-0008-y
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