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High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
Leucobacter chironomi strain MM2LB(T) (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LB(T) was isolat...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511665/ https://www.ncbi.nlm.nih.gov/pubmed/26203333 http://dx.doi.org/10.1186/s40793-015-0003-3 |
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author | Laviad, Sivan Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Markowitz, Victor M Pukall, Rüdiger Klenk, Hans-Peter Woyke, Tanja Kyrpides, Nikos C Halpern, Malka |
author_facet | Laviad, Sivan Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Markowitz, Victor M Pukall, Rüdiger Klenk, Hans-Peter Woyke, Tanja Kyrpides, Nikos C Halpern, Malka |
author_sort | Laviad, Sivan |
collection | PubMed |
description | Leucobacter chironomi strain MM2LB(T) (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LB(T) was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LB(T) formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project. |
format | Online Article Text |
id | pubmed-4511665 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45116652015-07-23 High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass Laviad, Sivan Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Markowitz, Victor M Pukall, Rüdiger Klenk, Hans-Peter Woyke, Tanja Kyrpides, Nikos C Halpern, Malka Stand Genomic Sci Short Genome Report Leucobacter chironomi strain MM2LB(T) (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LB(T) was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LB(T) formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project. BioMed Central 2015-05-08 /pmc/articles/PMC4511665/ /pubmed/26203333 http://dx.doi.org/10.1186/s40793-015-0003-3 Text en Copyright © 2015 Laviad et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Laviad, Sivan Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Markowitz, Victor M Pukall, Rüdiger Klenk, Hans-Peter Woyke, Tanja Kyrpides, Nikos C Halpern, Malka High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass |
title | High quality draft genome sequence of Leucobacter chironomi strain
MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp.
egg mass |
title_full | High quality draft genome sequence of Leucobacter chironomi strain
MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp.
egg mass |
title_fullStr | High quality draft genome sequence of Leucobacter chironomi strain
MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp.
egg mass |
title_full_unstemmed | High quality draft genome sequence of Leucobacter chironomi strain
MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp.
egg mass |
title_short | High quality draft genome sequence of Leucobacter chironomi strain
MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp.
egg mass |
title_sort | high quality draft genome sequence of leucobacter chironomi strain
mm2lb(t) (dsm 19883(t)) isolated from a chironomus sp.
egg mass |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511665/ https://www.ncbi.nlm.nih.gov/pubmed/26203333 http://dx.doi.org/10.1186/s40793-015-0003-3 |
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