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High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass

Leucobacter chironomi strain MM2LB(T) (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LB(T) was isolat...

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Autores principales: Laviad, Sivan, Lapidus, Alla, Copeland, Alex, Reddy, TBK, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N, Markowitz, Victor M, Pukall, Rüdiger, Klenk, Hans-Peter, Woyke, Tanja, Kyrpides, Nikos C, Halpern, Malka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511665/
https://www.ncbi.nlm.nih.gov/pubmed/26203333
http://dx.doi.org/10.1186/s40793-015-0003-3
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author Laviad, Sivan
Lapidus, Alla
Copeland, Alex
Reddy, TBK
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Markowitz, Victor M
Pukall, Rüdiger
Klenk, Hans-Peter
Woyke, Tanja
Kyrpides, Nikos C
Halpern, Malka
author_facet Laviad, Sivan
Lapidus, Alla
Copeland, Alex
Reddy, TBK
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Markowitz, Victor M
Pukall, Rüdiger
Klenk, Hans-Peter
Woyke, Tanja
Kyrpides, Nikos C
Halpern, Malka
author_sort Laviad, Sivan
collection PubMed
description Leucobacter chironomi strain MM2LB(T) (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LB(T) was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LB(T) formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.
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spelling pubmed-45116652015-07-23 High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass Laviad, Sivan Lapidus, Alla Copeland, Alex Reddy, TBK Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Markowitz, Victor M Pukall, Rüdiger Klenk, Hans-Peter Woyke, Tanja Kyrpides, Nikos C Halpern, Malka Stand Genomic Sci Short Genome Report Leucobacter chironomi strain MM2LB(T) (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LB(T) was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LB(T) formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. The DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project. BioMed Central 2015-05-08 /pmc/articles/PMC4511665/ /pubmed/26203333 http://dx.doi.org/10.1186/s40793-015-0003-3 Text en Copyright © 2015 Laviad et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Laviad, Sivan
Lapidus, Alla
Copeland, Alex
Reddy, TBK
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Markowitz, Victor M
Pukall, Rüdiger
Klenk, Hans-Peter
Woyke, Tanja
Kyrpides, Nikos C
Halpern, Malka
High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
title High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
title_full High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
title_fullStr High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
title_full_unstemmed High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
title_short High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass
title_sort high quality draft genome sequence of leucobacter chironomi strain mm2lb(t) (dsm 19883(t)) isolated from a chironomus sp. egg mass
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511665/
https://www.ncbi.nlm.nih.gov/pubmed/26203333
http://dx.doi.org/10.1186/s40793-015-0003-3
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