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High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.

Meganema perideroedes Gr1(T) is a filamentous bacterium isolated from an activated sludge wastewater treatment plant where it is implicated in poor sludge settleability (bulking). M. perideroedes is the sole described species of the genus Meganema and of the proposed novel family “Meganemaceae”. Her...

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Autores principales: McIlroy, Simon J, Lapidus, Alla, Thomsen, Trine R, Han, James, Haynes, Matthew, Lobos, Elizabeth, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N, Markowitz, Victor, Verbarg, Susanne, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos, Nielsen, Per H
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511698/
https://www.ncbi.nlm.nih.gov/pubmed/26203335
http://dx.doi.org/10.1186/s40793-015-0013-1
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author McIlroy, Simon J
Lapidus, Alla
Thomsen, Trine R
Han, James
Haynes, Matthew
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Markowitz, Victor
Verbarg, Susanne
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos
Nielsen, Per H
author_facet McIlroy, Simon J
Lapidus, Alla
Thomsen, Trine R
Han, James
Haynes, Matthew
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Markowitz, Victor
Verbarg, Susanne
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos
Nielsen, Per H
author_sort McIlroy, Simon J
collection PubMed
description Meganema perideroedes Gr1(T) is a filamentous bacterium isolated from an activated sludge wastewater treatment plant where it is implicated in poor sludge settleability (bulking). M. perideroedes is the sole described species of the genus Meganema and of the proposed novel family “Meganemaceae”. Here we describe the features of the type strain Gr1(T) along with its annotated genome sequence. The 3,409,949 bp long draft genome consists of 22 scaffolds with 3,033 protein-coding and 59 RNA genes and is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG project. Notably, genome annotation indicated the potential for facultative methylotrophy. However, the ability to utilize methanol as a carbon source could not be empirically demonstrated for the type strain or for in situ Meganema spp. strains. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0013-1) contains supplementary material, which is available to authorized users.
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spelling pubmed-45116982015-07-23 High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov. McIlroy, Simon J Lapidus, Alla Thomsen, Trine R Han, James Haynes, Matthew Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Markowitz, Victor Verbarg, Susanne Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos Nielsen, Per H Stand Genomic Sci Short Genome Report Meganema perideroedes Gr1(T) is a filamentous bacterium isolated from an activated sludge wastewater treatment plant where it is implicated in poor sludge settleability (bulking). M. perideroedes is the sole described species of the genus Meganema and of the proposed novel family “Meganemaceae”. Here we describe the features of the type strain Gr1(T) along with its annotated genome sequence. The 3,409,949 bp long draft genome consists of 22 scaffolds with 3,033 protein-coding and 59 RNA genes and is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG project. Notably, genome annotation indicated the potential for facultative methylotrophy. However, the ability to utilize methanol as a carbon source could not be empirically demonstrated for the type strain or for in situ Meganema spp. strains. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0013-1) contains supplementary material, which is available to authorized users. BioMed Central 2015-02-27 /pmc/articles/PMC4511698/ /pubmed/26203335 http://dx.doi.org/10.1186/s40793-015-0013-1 Text en © McIlroy et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
McIlroy, Simon J
Lapidus, Alla
Thomsen, Trine R
Han, James
Haynes, Matthew
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Markowitz, Victor
Verbarg, Susanne
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos
Nielsen, Per H
High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
title High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
title_full High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
title_fullStr High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
title_full_unstemmed High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
title_short High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
title_sort high quality draft genome sequence of meganema perideroedes str. gr1(t) and a proposal for its reclassification to the family meganemaceae fam. nov.
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511698/
https://www.ncbi.nlm.nih.gov/pubmed/26203335
http://dx.doi.org/10.1186/s40793-015-0013-1
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