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Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations
There has been increasing awareness in the wider biological community of the role of clonal phenotypic heterogeneity in playing key roles in phenomena such as cellular bet-hedging and decision making, as in the case of the phage-λ lysis/lysogeny and B. Subtilis competence/vegetative pathways. Here,...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4512695/ https://www.ncbi.nlm.nih.gov/pubmed/26203903 http://dx.doi.org/10.1371/journal.pone.0132397 |
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author | Lee, UnJin Skinner, John J. Reinitz, John Rosner, Marsha Rich Kim, Eun-Jin |
author_facet | Lee, UnJin Skinner, John J. Reinitz, John Rosner, Marsha Rich Kim, Eun-Jin |
author_sort | Lee, UnJin |
collection | PubMed |
description | There has been increasing awareness in the wider biological community of the role of clonal phenotypic heterogeneity in playing key roles in phenomena such as cellular bet-hedging and decision making, as in the case of the phage-λ lysis/lysogeny and B. Subtilis competence/vegetative pathways. Here, we report on the effect of stochasticity in growth rate, cellular memory/intermittency, and its relation to phenotypic heterogeneity. We first present a linear stochastic differential model with finite auto-correlation time, where a randomly fluctuating growth rate with a negative average is shown to result in exponential growth for sufficiently large fluctuations in growth rate. We then present a non-linear stochastic self-regulation model where the loss of coherent self-regulation and an increase in noise can induce a shift from bounded to unbounded growth. An important consequence of these models is that while the average change in phenotype may not differ for various parameter sets, the variance of the resulting distributions may considerably change. This demonstrates the necessity of understanding the influence of variance and heterogeneity within seemingly identical clonal populations, while providing a mechanism for varying functional consequences of such heterogeneity. Our results highlight the importance of a paradigm shift from a deterministic to a probabilistic view of clonality in understanding selection as an optimization problem on noise-driven processes, resulting in a wide range of biological implications, from robustness to environmental stress to the development of drug resistance. |
format | Online Article Text |
id | pubmed-4512695 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45126952015-07-24 Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations Lee, UnJin Skinner, John J. Reinitz, John Rosner, Marsha Rich Kim, Eun-Jin PLoS One Research Article There has been increasing awareness in the wider biological community of the role of clonal phenotypic heterogeneity in playing key roles in phenomena such as cellular bet-hedging and decision making, as in the case of the phage-λ lysis/lysogeny and B. Subtilis competence/vegetative pathways. Here, we report on the effect of stochasticity in growth rate, cellular memory/intermittency, and its relation to phenotypic heterogeneity. We first present a linear stochastic differential model with finite auto-correlation time, where a randomly fluctuating growth rate with a negative average is shown to result in exponential growth for sufficiently large fluctuations in growth rate. We then present a non-linear stochastic self-regulation model where the loss of coherent self-regulation and an increase in noise can induce a shift from bounded to unbounded growth. An important consequence of these models is that while the average change in phenotype may not differ for various parameter sets, the variance of the resulting distributions may considerably change. This demonstrates the necessity of understanding the influence of variance and heterogeneity within seemingly identical clonal populations, while providing a mechanism for varying functional consequences of such heterogeneity. Our results highlight the importance of a paradigm shift from a deterministic to a probabilistic view of clonality in understanding selection as an optimization problem on noise-driven processes, resulting in a wide range of biological implications, from robustness to environmental stress to the development of drug resistance. Public Library of Science 2015-07-23 /pmc/articles/PMC4512695/ /pubmed/26203903 http://dx.doi.org/10.1371/journal.pone.0132397 Text en © 2015 Lee et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Lee, UnJin Skinner, John J. Reinitz, John Rosner, Marsha Rich Kim, Eun-Jin Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
title | Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
title_full | Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
title_fullStr | Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
title_full_unstemmed | Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
title_short | Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations |
title_sort | noise-driven phenotypic heterogeneity with finite correlation time in clonal populations |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4512695/ https://www.ncbi.nlm.nih.gov/pubmed/26203903 http://dx.doi.org/10.1371/journal.pone.0132397 |
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