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Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary

Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft ge...

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Autores principales: Szabó, Zsolt, Gyula, Péter, Robotka, Hermina, Bató, Emese, Gálik, Bence, Pach, Péter, Pekker, Péter, Papp, Ildikó, Bihari, Zoltán
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4517660/
https://www.ncbi.nlm.nih.gov/pubmed/26221420
http://dx.doi.org/10.1186/s40793-015-0023-z
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author Szabó, Zsolt
Gyula, Péter
Robotka, Hermina
Bató, Emese
Gálik, Bence
Pach, Péter
Pekker, Péter
Papp, Ildikó
Bihari, Zoltán
author_facet Szabó, Zsolt
Gyula, Péter
Robotka, Hermina
Bató, Emese
Gálik, Bence
Pach, Péter
Pekker, Péter
Papp, Ildikó
Bihari, Zoltán
author_sort Szabó, Zsolt
collection PubMed
description Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M. sp. strain T29 together with the description of the genome properties and its annotation. The draft genome consists of 608 contigs with a total size of 4,449,424 bp and an average coverage of 150×. The genome exhibits an average G + C content of 68.7 %, and contains 4754 protein coding and 52 RNA genes, including 48 tRNA genes. 71 % of the protein coding genes could be assigned to COG (Clusters of Orthologous Groups) categories. A formerly unknown circular plasmid designated as pT29A was isolated and sequenced separately and found to be 86,856 bp long.
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spelling pubmed-45176602015-07-29 Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary Szabó, Zsolt Gyula, Péter Robotka, Hermina Bató, Emese Gálik, Bence Pach, Péter Pekker, Péter Papp, Ildikó Bihari, Zoltán Stand Genomic Sci Short Genome Report Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M. sp. strain T29 together with the description of the genome properties and its annotation. The draft genome consists of 608 contigs with a total size of 4,449,424 bp and an average coverage of 150×. The genome exhibits an average G + C content of 68.7 %, and contains 4754 protein coding and 52 RNA genes, including 48 tRNA genes. 71 % of the protein coding genes could be assigned to COG (Clusters of Orthologous Groups) categories. A formerly unknown circular plasmid designated as pT29A was isolated and sequenced separately and found to be 86,856 bp long. BioMed Central 2015-07-19 /pmc/articles/PMC4517660/ /pubmed/26221420 http://dx.doi.org/10.1186/s40793-015-0023-z Text en © Szabó et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Szabó, Zsolt
Gyula, Péter
Robotka, Hermina
Bató, Emese
Gálik, Bence
Pach, Péter
Pekker, Péter
Papp, Ildikó
Bihari, Zoltán
Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary
title Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary
title_full Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary
title_fullStr Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary
title_full_unstemmed Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary
title_short Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary
title_sort draft genome sequence of methylibium sp. strain t29, a novel fuel oxygenate-degrading bacterial isolate from hungary
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4517660/
https://www.ncbi.nlm.nih.gov/pubmed/26221420
http://dx.doi.org/10.1186/s40793-015-0023-z
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