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A portable expression resource for engineering cross-species genetic circuits and pathways

Genetic circuits and metabolic pathways can be reengineered to allow organisms to process signals and manufacture useful chemicals. However, their functions currently rely on organism-specific regulatory parts, fragmenting synthetic biology and metabolic engineering into host-specific domains. To un...

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Detalles Bibliográficos
Autores principales: Kushwaha, Manish, Salis, Howard M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Pub. Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4518296/
https://www.ncbi.nlm.nih.gov/pubmed/26184393
http://dx.doi.org/10.1038/ncomms8832
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author Kushwaha, Manish
Salis, Howard M.
author_facet Kushwaha, Manish
Salis, Howard M.
author_sort Kushwaha, Manish
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description Genetic circuits and metabolic pathways can be reengineered to allow organisms to process signals and manufacture useful chemicals. However, their functions currently rely on organism-specific regulatory parts, fragmenting synthetic biology and metabolic engineering into host-specific domains. To unify efforts, here we have engineered a cross-species expression resource that enables circuits and pathways to reuse the same genetic parts, while functioning similarly across diverse organisms. Our engineered system combines mixed feedback control loops and cross-species translation signals to autonomously self-regulate expression of an orthogonal polymerase without host-specific promoters, achieving nontoxic and tuneable gene expression in diverse Gram-positive and Gram-negative bacteria. Combining 50 characterized system variants with mechanistic modelling, we show how the cross-species expression resource's dynamics, capacity and toxicity are controlled by the control loops' architecture and feedback strengths. We also demonstrate one application of the resource by reusing the same genetic parts to express a biosynthesis pathway in both model and non-model hosts.
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spelling pubmed-45182962015-08-07 A portable expression resource for engineering cross-species genetic circuits and pathways Kushwaha, Manish Salis, Howard M. Nat Commun Article Genetic circuits and metabolic pathways can be reengineered to allow organisms to process signals and manufacture useful chemicals. However, their functions currently rely on organism-specific regulatory parts, fragmenting synthetic biology and metabolic engineering into host-specific domains. To unify efforts, here we have engineered a cross-species expression resource that enables circuits and pathways to reuse the same genetic parts, while functioning similarly across diverse organisms. Our engineered system combines mixed feedback control loops and cross-species translation signals to autonomously self-regulate expression of an orthogonal polymerase without host-specific promoters, achieving nontoxic and tuneable gene expression in diverse Gram-positive and Gram-negative bacteria. Combining 50 characterized system variants with mechanistic modelling, we show how the cross-species expression resource's dynamics, capacity and toxicity are controlled by the control loops' architecture and feedback strengths. We also demonstrate one application of the resource by reusing the same genetic parts to express a biosynthesis pathway in both model and non-model hosts. Nature Pub. Group 2015-07-17 /pmc/articles/PMC4518296/ /pubmed/26184393 http://dx.doi.org/10.1038/ncomms8832 Text en Copyright © 2015, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Kushwaha, Manish
Salis, Howard M.
A portable expression resource for engineering cross-species genetic circuits and pathways
title A portable expression resource for engineering cross-species genetic circuits and pathways
title_full A portable expression resource for engineering cross-species genetic circuits and pathways
title_fullStr A portable expression resource for engineering cross-species genetic circuits and pathways
title_full_unstemmed A portable expression resource for engineering cross-species genetic circuits and pathways
title_short A portable expression resource for engineering cross-species genetic circuits and pathways
title_sort portable expression resource for engineering cross-species genetic circuits and pathways
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4518296/
https://www.ncbi.nlm.nih.gov/pubmed/26184393
http://dx.doi.org/10.1038/ncomms8832
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