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Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination

This work presents Xtal-xplore-R, a tool dedicated to the visualization of two-dimensional cuts through the multidimensional crystallographic residual function. It imports arbitrary crystal structures, generates artificial diffraction data, and calculates and investigates the residual function in pa...

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Detalles Bibliográficos
Autores principales: Simons, Jan Marten, Roth, Georg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520293/
https://www.ncbi.nlm.nih.gov/pubmed/26306094
http://dx.doi.org/10.1107/S1600576715012169
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author Simons, Jan Marten
Roth, Georg
author_facet Simons, Jan Marten
Roth, Georg
author_sort Simons, Jan Marten
collection PubMed
description This work presents Xtal-xplore-R, a tool dedicated to the visualization of two-dimensional cuts through the multidimensional crystallographic residual function. It imports arbitrary crystal structures, generates artificial diffraction data, and calculates and investigates the residual function in parameter space. The program serves two major purposes. Firstly, it is part of a more general project dealing with structure determination via global optimization techniques. In this context, the tool is being used to systematically analyse characteristic universal features of the target function (residual function) which can be used to develop appropriate problem-specific heuristic optimization algorithms. Secondly, Xtal-xplore-R is intended as a didactic tool to visualize how changes in atom parameters affect the residual function and can be used to demonstrate manual structure optimization for simple crystal structures.
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spelling pubmed-45202932015-08-24 Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination Simons, Jan Marten Roth, Georg J Appl Crystallogr Computer Programs This work presents Xtal-xplore-R, a tool dedicated to the visualization of two-dimensional cuts through the multidimensional crystallographic residual function. It imports arbitrary crystal structures, generates artificial diffraction data, and calculates and investigates the residual function in parameter space. The program serves two major purposes. Firstly, it is part of a more general project dealing with structure determination via global optimization techniques. In this context, the tool is being used to systematically analyse characteristic universal features of the target function (residual function) which can be used to develop appropriate problem-specific heuristic optimization algorithms. Secondly, Xtal-xplore-R is intended as a didactic tool to visualize how changes in atom parameters affect the residual function and can be used to demonstrate manual structure optimization for simple crystal structures. International Union of Crystallography 2015-07-28 /pmc/articles/PMC4520293/ /pubmed/26306094 http://dx.doi.org/10.1107/S1600576715012169 Text en © Simons and Roth 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Computer Programs
Simons, Jan Marten
Roth, Georg
Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
title Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
title_full Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
title_fullStr Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
title_full_unstemmed Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
title_short Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
title_sort xtal-xplore-r: a graphical tool for exploring the residual function involved in crystal structure determination
topic Computer Programs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520293/
https://www.ncbi.nlm.nih.gov/pubmed/26306094
http://dx.doi.org/10.1107/S1600576715012169
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