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Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination
This work presents Xtal-xplore-R, a tool dedicated to the visualization of two-dimensional cuts through the multidimensional crystallographic residual function. It imports arbitrary crystal structures, generates artificial diffraction data, and calculates and investigates the residual function in pa...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520293/ https://www.ncbi.nlm.nih.gov/pubmed/26306094 http://dx.doi.org/10.1107/S1600576715012169 |
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author | Simons, Jan Marten Roth, Georg |
author_facet | Simons, Jan Marten Roth, Georg |
author_sort | Simons, Jan Marten |
collection | PubMed |
description | This work presents Xtal-xplore-R, a tool dedicated to the visualization of two-dimensional cuts through the multidimensional crystallographic residual function. It imports arbitrary crystal structures, generates artificial diffraction data, and calculates and investigates the residual function in parameter space. The program serves two major purposes. Firstly, it is part of a more general project dealing with structure determination via global optimization techniques. In this context, the tool is being used to systematically analyse characteristic universal features of the target function (residual function) which can be used to develop appropriate problem-specific heuristic optimization algorithms. Secondly, Xtal-xplore-R is intended as a didactic tool to visualize how changes in atom parameters affect the residual function and can be used to demonstrate manual structure optimization for simple crystal structures. |
format | Online Article Text |
id | pubmed-4520293 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-45202932015-08-24 Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination Simons, Jan Marten Roth, Georg J Appl Crystallogr Computer Programs This work presents Xtal-xplore-R, a tool dedicated to the visualization of two-dimensional cuts through the multidimensional crystallographic residual function. It imports arbitrary crystal structures, generates artificial diffraction data, and calculates and investigates the residual function in parameter space. The program serves two major purposes. Firstly, it is part of a more general project dealing with structure determination via global optimization techniques. In this context, the tool is being used to systematically analyse characteristic universal features of the target function (residual function) which can be used to develop appropriate problem-specific heuristic optimization algorithms. Secondly, Xtal-xplore-R is intended as a didactic tool to visualize how changes in atom parameters affect the residual function and can be used to demonstrate manual structure optimization for simple crystal structures. International Union of Crystallography 2015-07-28 /pmc/articles/PMC4520293/ /pubmed/26306094 http://dx.doi.org/10.1107/S1600576715012169 Text en © Simons and Roth 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Computer Programs Simons, Jan Marten Roth, Georg Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination |
title |
Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination |
title_full |
Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination |
title_fullStr |
Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination |
title_full_unstemmed |
Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination |
title_short |
Xtal-xplore-R: a graphical tool for exploring the residual function involved in crystal structure determination |
title_sort | xtal-xplore-r: a graphical tool for exploring the residual function involved in crystal structure determination |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520293/ https://www.ncbi.nlm.nih.gov/pubmed/26306094 http://dx.doi.org/10.1107/S1600576715012169 |
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