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Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations

Recent findings revealed that the commonly used (15)N(2) tracer assay for the determination of dinitrogen (N(2)) fixation can underestimate the activity of aquatic N(2)-fixing organisms. Therefore, a modification to the method using pre-prepared (15−15)N(2)-enriched water was proposed. Here, we pres...

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Autores principales: Klawonn, Isabell, Lavik, Gaute, Böning, Philipp, Marchant, Hannah K., Dekaezemacker, Julien, Mohr, Wiebke, Ploug, Helle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4523818/
https://www.ncbi.nlm.nih.gov/pubmed/26300853
http://dx.doi.org/10.3389/fmicb.2015.00769
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author Klawonn, Isabell
Lavik, Gaute
Böning, Philipp
Marchant, Hannah K.
Dekaezemacker, Julien
Mohr, Wiebke
Ploug, Helle
author_facet Klawonn, Isabell
Lavik, Gaute
Böning, Philipp
Marchant, Hannah K.
Dekaezemacker, Julien
Mohr, Wiebke
Ploug, Helle
author_sort Klawonn, Isabell
collection PubMed
description Recent findings revealed that the commonly used (15)N(2) tracer assay for the determination of dinitrogen (N(2)) fixation can underestimate the activity of aquatic N(2)-fixing organisms. Therefore, a modification to the method using pre-prepared (15−15)N(2)-enriched water was proposed. Here, we present a rigorous assessment and outline a simple procedure for the preparation of (15−15)N(2)-enriched water. We recommend to fill sterile-filtered water into serum bottles and to add (15−15)N(2) gas to the water in amounts exceeding the standard N(2) solubility, followed by vigorous agitation (vortex mixing ≥ 5 min). Optionally, water can be degassed at low-pressure (≥950 mbar) for 10 min prior to the (15−15)N(2) gas addition to indirectly enhance the (15−15)N(2) concentration. This preparation of (15−15)N(2)-enriched water can be done within 1 h using standard laboratory equipment. The final (15)N-atom% excess was 5% after replacing 2–5% of the incubation volume with (15−15)N(2)-enriched water. Notably, the addition of (15−15)N(2)-enriched water can alter levels of trace elements in the incubation water due to the contact of (15−15)N(2)-enriched water with glass, plastic and rubber ware. In our tests, levels of trace elements (Fe, P, Mn, Mo, Cu, Zn) increased by up to 0.1 nmol L(−1) in the final incubation volume, which may bias rate measurements in regions where N(2) fixation is limited by trace elements. For these regions, we tested an alternative way to enrich water with (15−15)N(2). The (15−15)N(2) was injected as a bubble directly to the incubation water, followed by gentle shaking. Immediately thereafter, the bubble was replaced with water to stop the (15−15)N(2) equilibration. This approach achieved a (15)N-atom% excess of 6.6 ± 1.7% when adding 2 mL (15−15)N(2) per liter of incubation water. The herein presented methodological tests offer guidelines for the (15)N(2) tracer assay and thus, are crucial to circumvent methodological draw-backs for future N(2) fixation assessments.
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spelling pubmed-45238182015-08-21 Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations Klawonn, Isabell Lavik, Gaute Böning, Philipp Marchant, Hannah K. Dekaezemacker, Julien Mohr, Wiebke Ploug, Helle Front Microbiol Microbiology Recent findings revealed that the commonly used (15)N(2) tracer assay for the determination of dinitrogen (N(2)) fixation can underestimate the activity of aquatic N(2)-fixing organisms. Therefore, a modification to the method using pre-prepared (15−15)N(2)-enriched water was proposed. Here, we present a rigorous assessment and outline a simple procedure for the preparation of (15−15)N(2)-enriched water. We recommend to fill sterile-filtered water into serum bottles and to add (15−15)N(2) gas to the water in amounts exceeding the standard N(2) solubility, followed by vigorous agitation (vortex mixing ≥ 5 min). Optionally, water can be degassed at low-pressure (≥950 mbar) for 10 min prior to the (15−15)N(2) gas addition to indirectly enhance the (15−15)N(2) concentration. This preparation of (15−15)N(2)-enriched water can be done within 1 h using standard laboratory equipment. The final (15)N-atom% excess was 5% after replacing 2–5% of the incubation volume with (15−15)N(2)-enriched water. Notably, the addition of (15−15)N(2)-enriched water can alter levels of trace elements in the incubation water due to the contact of (15−15)N(2)-enriched water with glass, plastic and rubber ware. In our tests, levels of trace elements (Fe, P, Mn, Mo, Cu, Zn) increased by up to 0.1 nmol L(−1) in the final incubation volume, which may bias rate measurements in regions where N(2) fixation is limited by trace elements. For these regions, we tested an alternative way to enrich water with (15−15)N(2). The (15−15)N(2) was injected as a bubble directly to the incubation water, followed by gentle shaking. Immediately thereafter, the bubble was replaced with water to stop the (15−15)N(2) equilibration. This approach achieved a (15)N-atom% excess of 6.6 ± 1.7% when adding 2 mL (15−15)N(2) per liter of incubation water. The herein presented methodological tests offer guidelines for the (15)N(2) tracer assay and thus, are crucial to circumvent methodological draw-backs for future N(2) fixation assessments. Frontiers Media S.A. 2015-08-04 /pmc/articles/PMC4523818/ /pubmed/26300853 http://dx.doi.org/10.3389/fmicb.2015.00769 Text en Copyright © 2015 Klawonn, Lavik, Böning, Marchant, Dekaezemacker, Mohr and Ploug. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Klawonn, Isabell
Lavik, Gaute
Böning, Philipp
Marchant, Hannah K.
Dekaezemacker, Julien
Mohr, Wiebke
Ploug, Helle
Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
title Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
title_full Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
title_fullStr Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
title_full_unstemmed Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
title_short Simple approach for the preparation of (15−15)N(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
title_sort simple approach for the preparation of (15−15)n(2)-enriched water for nitrogen fixation assessments: evaluation, application and recommendations
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4523818/
https://www.ncbi.nlm.nih.gov/pubmed/26300853
http://dx.doi.org/10.3389/fmicb.2015.00769
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