Cargando…

MassCascade: Visual Programming for LC-MS Data Processing in Metabolomics

Liquid chromatography coupled to mass spectrometry (LC-MS) is commonly applied to investigate the small molecule complement of organisms. Several software tools are typically joined in custom pipelines to semi-automatically process and analyse the resulting data. General workflow environments like t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Beisken, Stephan, Earll, Mark, Portwood, David, Seymour, Mark, Steinbeck, Christoph
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	WILEY-VCH Verlag 2014
Materias:	Application Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524413/ https://www.ncbi.nlm.nih.gov/pubmed/26279687 http://dx.doi.org/10.1002/minf.201400016

Ejemplares similares

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data
por: Gloaguen, Yoann, et al.
Publicado: (2017)

MetExtract: a new software tool for the automated comprehensive extraction of metabolite-derived LC/MS signals in metabolomics research
por: Bueschl, Christoph, et al.
Publicado: (2012)

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics
por: Silva, Ricardo R., et al.
Publicado: (2014)

An R package to analyse LC/MS metabolomic data: MAIT (Metabolite Automatic Identification Toolkit)
por: Fernández-Albert, Francesc, et al.
Publicado: (2014)

MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis
por: Bradbury, James, et al.
Publicado: (2015)

Metabolic differences in ripening of Solanum lycopersicum ‘Ailsa Craig’ and three monogenic mutants
por: Beisken, Stephan, et al.
Publicado: (2014)

MetMSLine: an automated and fully integrated pipeline for rapid processing of high-resolution LC–MS metabolomic datasets
por: Edmands, William M. B., et al.
Publicado: (2015)

ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0—an improved Bayesian-based method for the annotation of LC–MS/MS untargeted metabolomics data
por: Del Carratore, Francesco, et al.
Publicado: (2023)

Homologue series detection and management in LC-MS data with homologueDiscoverer
por: Mildau, Kevin, et al.
Publicado: (2022)

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data
por: Rosenberger, George, et al.
Publicado: (2014)

Peak Pair Pruner: a post-processing software to MS-DIAL for peak pair validation and ratio quantification of isotopic labeling LC-MS(/MS) data
por: Smith, Ryan A, et al.
Publicado: (2023)

metID: an R package for automatable compound annotation for LC−MS-based data
por: Shen, Xiaotao, et al.
Publicado: (2021)

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data
por: Larralde, Martin, et al.
Publicado: (2017)

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows
por: Kiefer, Patrick, et al.
Publicado: (2013)

peakPantheR, an R package for large-scale targeted extraction and integration of annotated metabolic features in LC–MS profiling datasets
por: Wolfer, Arnaud M, et al.
Publicado: (2021)

NaViA: a program for the visual analysis of complex mass spectra
por: Quetschlich, Daniel, et al.
Publicado: (2021)

bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
por: Boxall, Ruth, et al.
Publicado: (2023)

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
por: García-Alcalde, Fernando, et al.
Publicado: (2011)

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry
por: Wandy, Joe, et al.
Publicado: (2018)

VisioProt-MS: interactive 2D maps from intact protein mass spectrometry
por: Locard-Paulet, Marie, et al.
Publicado: (2019)

Metingear: a development environment for annotating genome-scale metabolic models
por: May, John W., et al.
Publicado: (2013)

MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data
por: Naake, Thomas, et al.
Publicado: (2023)

pepgrep: A Tool for Peptide MS/MS Pattern Matching
por: Chernukhin, Igor
Publicado: (2013)

Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass
por: Blanchard, Alexandre P., et al.
Publicado: (2013)

Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data
por: Khakzad, Hamed, et al.
Publicado: (2021)

Seevolution: visualizing chromosome evolution
por: Esteban-Marcos, Andrés, et al.
Publicado: (2009)

MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data
por: Rojas-Chertó, Miguel, et al.
Publicado: (2012)

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics
por: Giacomoni, Franck, et al.
Publicado: (2015)

metabolomicsR: a streamlined workflow to analyze metabolomic data in R
por: Han, Xikun, et al.
Publicado: (2022)

A System for Information Management in BioMedical Studies—SIMBioMS
por: Krestyaninova, Maria, et al.
Publicado: (2009)

UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics
por: Sakurai, Nozomu, et al.
Publicado: (2018)

MTMDAT: Automated analysis and visualization of mass spectrometry data for tertiary and quaternary structure probing of proteins
por: Hennig, Janosch, et al.
Publicado: (2008)

Bandage: interactive visualization of de novo genome assemblies
por: Wick, Ryan R., et al.
Publicado: (2015)

Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
por: Lau, Andy M C, et al.
Publicado: (2019)

HAMMER: automated operation of mass frontier to construct in silico mass spectral fragmentation libraries
por: Zhou, Jiarui, et al.
Publicado: (2014)

OntoQuery: easy-to-use web-based OWL querying
por: Tudose, Ilinca, et al.
Publicado: (2013)

poRe: an R package for the visualization and analysis of nanopore sequencing data
por: Watson, Mick, et al.
Publicado: (2015)

MAGI-MS: multiple seed-centric module discovery
por: Chow, Julie C, et al.
Publicado: (2022)

Program for Integration and Rapid Analysis of Mass Isotopomer Distributions (PIRAMID)
por: Gomez, Javier D, et al.
Publicado: (2023)

Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data
por: L’Yi, Sehi, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_876m4ebpd3t4h79hduj90788ol