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Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
Management of drug resistant focal epilepsy would be greatly assisted by a reliable warning system capable of alerting patients prior to seizures to allow the patient to adjust activities or medication. Such a system requires successful identification of a preictal, or seizure-prone state. Identific...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524640/ https://www.ncbi.nlm.nih.gov/pubmed/26241907 http://dx.doi.org/10.1371/journal.pone.0133900 |
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author | Brinkmann, Benjamin H. Patterson, Edward E. Vite, Charles Vasoli, Vincent M. Crepeau, Daniel Stead, Matt Howbert, J. Jeffry Cherkassky, Vladimir Wagenaar, Joost B. Litt, Brian Worrell, Gregory A. |
author_facet | Brinkmann, Benjamin H. Patterson, Edward E. Vite, Charles Vasoli, Vincent M. Crepeau, Daniel Stead, Matt Howbert, J. Jeffry Cherkassky, Vladimir Wagenaar, Joost B. Litt, Brian Worrell, Gregory A. |
author_sort | Brinkmann, Benjamin H. |
collection | PubMed |
description | Management of drug resistant focal epilepsy would be greatly assisted by a reliable warning system capable of alerting patients prior to seizures to allow the patient to adjust activities or medication. Such a system requires successful identification of a preictal, or seizure-prone state. Identification of preictal states in continuous long- duration intracranial electroencephalographic (iEEG) recordings of dogs with naturally occurring epilepsy was investigated using a support vector machine (SVM) algorithm. The dogs studied were implanted with a 16-channel ambulatory iEEG recording device with average channel reference for a mean (st. dev.) of 380.4 (+87.5) days producing 220.2 (+104.1) days of intracranial EEG recorded at 400 Hz for analysis. The iEEG records had 51.6 (+52.8) seizures identified, of which 35.8 (+30.4) seizures were preceded by more than 4 hours of seizure-free data. Recorded iEEG data were stratified into 11 contiguous, non-overlapping frequency bands and binned into one-minute synchrony features for analysis. Performance of the SVM classifier was assessed using a 5-fold cross validation approach, where preictal training data were taken from 90 minute windows with a 5 minute pre-seizure offset. Analysis of the optimal preictal training time was performed by repeating the cross validation over a range of preictal windows and comparing results. We show that the optimization of feature selection varies for each subject, i.e. algorithms are subject specific, but achieve prediction performance significantly better than a time-matched Poisson random predictor (p<0.05) in 5/5 dogs analyzed. |
format | Online Article Text |
id | pubmed-4524640 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45246402015-08-06 Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy Brinkmann, Benjamin H. Patterson, Edward E. Vite, Charles Vasoli, Vincent M. Crepeau, Daniel Stead, Matt Howbert, J. Jeffry Cherkassky, Vladimir Wagenaar, Joost B. Litt, Brian Worrell, Gregory A. PLoS One Research Article Management of drug resistant focal epilepsy would be greatly assisted by a reliable warning system capable of alerting patients prior to seizures to allow the patient to adjust activities or medication. Such a system requires successful identification of a preictal, or seizure-prone state. Identification of preictal states in continuous long- duration intracranial electroencephalographic (iEEG) recordings of dogs with naturally occurring epilepsy was investigated using a support vector machine (SVM) algorithm. The dogs studied were implanted with a 16-channel ambulatory iEEG recording device with average channel reference for a mean (st. dev.) of 380.4 (+87.5) days producing 220.2 (+104.1) days of intracranial EEG recorded at 400 Hz for analysis. The iEEG records had 51.6 (+52.8) seizures identified, of which 35.8 (+30.4) seizures were preceded by more than 4 hours of seizure-free data. Recorded iEEG data were stratified into 11 contiguous, non-overlapping frequency bands and binned into one-minute synchrony features for analysis. Performance of the SVM classifier was assessed using a 5-fold cross validation approach, where preictal training data were taken from 90 minute windows with a 5 minute pre-seizure offset. Analysis of the optimal preictal training time was performed by repeating the cross validation over a range of preictal windows and comparing results. We show that the optimization of feature selection varies for each subject, i.e. algorithms are subject specific, but achieve prediction performance significantly better than a time-matched Poisson random predictor (p<0.05) in 5/5 dogs analyzed. Public Library of Science 2015-08-04 /pmc/articles/PMC4524640/ /pubmed/26241907 http://dx.doi.org/10.1371/journal.pone.0133900 Text en © 2015 Brinkmann et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Brinkmann, Benjamin H. Patterson, Edward E. Vite, Charles Vasoli, Vincent M. Crepeau, Daniel Stead, Matt Howbert, J. Jeffry Cherkassky, Vladimir Wagenaar, Joost B. Litt, Brian Worrell, Gregory A. Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy |
title | Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy |
title_full | Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy |
title_fullStr | Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy |
title_full_unstemmed | Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy |
title_short | Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy |
title_sort | forecasting seizures using intracranial eeg measures and svm in naturally occurring canine epilepsy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524640/ https://www.ncbi.nlm.nih.gov/pubmed/26241907 http://dx.doi.org/10.1371/journal.pone.0133900 |
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