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Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy

Management of drug resistant focal epilepsy would be greatly assisted by a reliable warning system capable of alerting patients prior to seizures to allow the patient to adjust activities or medication. Such a system requires successful identification of a preictal, or seizure-prone state. Identific...

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Autores principales: Brinkmann, Benjamin H., Patterson, Edward E., Vite, Charles, Vasoli, Vincent M., Crepeau, Daniel, Stead, Matt, Howbert, J. Jeffry, Cherkassky, Vladimir, Wagenaar, Joost B., Litt, Brian, Worrell, Gregory A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524640/
https://www.ncbi.nlm.nih.gov/pubmed/26241907
http://dx.doi.org/10.1371/journal.pone.0133900
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author Brinkmann, Benjamin H.
Patterson, Edward E.
Vite, Charles
Vasoli, Vincent M.
Crepeau, Daniel
Stead, Matt
Howbert, J. Jeffry
Cherkassky, Vladimir
Wagenaar, Joost B.
Litt, Brian
Worrell, Gregory A.
author_facet Brinkmann, Benjamin H.
Patterson, Edward E.
Vite, Charles
Vasoli, Vincent M.
Crepeau, Daniel
Stead, Matt
Howbert, J. Jeffry
Cherkassky, Vladimir
Wagenaar, Joost B.
Litt, Brian
Worrell, Gregory A.
author_sort Brinkmann, Benjamin H.
collection PubMed
description Management of drug resistant focal epilepsy would be greatly assisted by a reliable warning system capable of alerting patients prior to seizures to allow the patient to adjust activities or medication. Such a system requires successful identification of a preictal, or seizure-prone state. Identification of preictal states in continuous long- duration intracranial electroencephalographic (iEEG) recordings of dogs with naturally occurring epilepsy was investigated using a support vector machine (SVM) algorithm. The dogs studied were implanted with a 16-channel ambulatory iEEG recording device with average channel reference for a mean (st. dev.) of 380.4 (+87.5) days producing 220.2 (+104.1) days of intracranial EEG recorded at 400 Hz for analysis. The iEEG records had 51.6 (+52.8) seizures identified, of which 35.8 (+30.4) seizures were preceded by more than 4 hours of seizure-free data. Recorded iEEG data were stratified into 11 contiguous, non-overlapping frequency bands and binned into one-minute synchrony features for analysis. Performance of the SVM classifier was assessed using a 5-fold cross validation approach, where preictal training data were taken from 90 minute windows with a 5 minute pre-seizure offset. Analysis of the optimal preictal training time was performed by repeating the cross validation over a range of preictal windows and comparing results. We show that the optimization of feature selection varies for each subject, i.e. algorithms are subject specific, but achieve prediction performance significantly better than a time-matched Poisson random predictor (p<0.05) in 5/5 dogs analyzed.
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spelling pubmed-45246402015-08-06 Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy Brinkmann, Benjamin H. Patterson, Edward E. Vite, Charles Vasoli, Vincent M. Crepeau, Daniel Stead, Matt Howbert, J. Jeffry Cherkassky, Vladimir Wagenaar, Joost B. Litt, Brian Worrell, Gregory A. PLoS One Research Article Management of drug resistant focal epilepsy would be greatly assisted by a reliable warning system capable of alerting patients prior to seizures to allow the patient to adjust activities or medication. Such a system requires successful identification of a preictal, or seizure-prone state. Identification of preictal states in continuous long- duration intracranial electroencephalographic (iEEG) recordings of dogs with naturally occurring epilepsy was investigated using a support vector machine (SVM) algorithm. The dogs studied were implanted with a 16-channel ambulatory iEEG recording device with average channel reference for a mean (st. dev.) of 380.4 (+87.5) days producing 220.2 (+104.1) days of intracranial EEG recorded at 400 Hz for analysis. The iEEG records had 51.6 (+52.8) seizures identified, of which 35.8 (+30.4) seizures were preceded by more than 4 hours of seizure-free data. Recorded iEEG data were stratified into 11 contiguous, non-overlapping frequency bands and binned into one-minute synchrony features for analysis. Performance of the SVM classifier was assessed using a 5-fold cross validation approach, where preictal training data were taken from 90 minute windows with a 5 minute pre-seizure offset. Analysis of the optimal preictal training time was performed by repeating the cross validation over a range of preictal windows and comparing results. We show that the optimization of feature selection varies for each subject, i.e. algorithms are subject specific, but achieve prediction performance significantly better than a time-matched Poisson random predictor (p<0.05) in 5/5 dogs analyzed. Public Library of Science 2015-08-04 /pmc/articles/PMC4524640/ /pubmed/26241907 http://dx.doi.org/10.1371/journal.pone.0133900 Text en © 2015 Brinkmann et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Brinkmann, Benjamin H.
Patterson, Edward E.
Vite, Charles
Vasoli, Vincent M.
Crepeau, Daniel
Stead, Matt
Howbert, J. Jeffry
Cherkassky, Vladimir
Wagenaar, Joost B.
Litt, Brian
Worrell, Gregory A.
Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
title Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
title_full Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
title_fullStr Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
title_full_unstemmed Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
title_short Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy
title_sort forecasting seizures using intracranial eeg measures and svm in naturally occurring canine epilepsy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524640/
https://www.ncbi.nlm.nih.gov/pubmed/26241907
http://dx.doi.org/10.1371/journal.pone.0133900
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