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Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research
Chronic stress (CS) was reported to associate with many complex diseases and stress-related diseases show strong comorbidity; however, molecular analyses have not been performed to date to evaluate common stress-induced biological processes across these diseases. We utilized networks constructed by...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526881/ https://www.ncbi.nlm.nih.gov/pubmed/26245528 http://dx.doi.org/10.1038/srep12939 |
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author | Guo, Liyuan Du, Yang Wang, Jing |
author_facet | Guo, Liyuan Du, Yang Wang, Jing |
author_sort | Guo, Liyuan |
collection | PubMed |
description | Chronic stress (CS) was reported to associate with many complex diseases and stress-related diseases show strong comorbidity; however, molecular analyses have not been performed to date to evaluate common stress-induced biological processes across these diseases. We utilized networks constructed by genes from seven genetic databases of stress-related diseases or systems to explore the common mechanisms. Genes were connected based on the interaction information of proteins they encode. A common sub-network constructed by 561 overlapping genes and 8863 overlapping edges among seven networks was identified and it provides a common gene module among seven stress-related diseases/systems. This module is significantly overlapped with network that constructed by genes from the CS gene database. 36 genes with high connectivity (hub genes) were identified from seven networks as potential key genes in those diseases/systems, 33 of hub genes were included in the common module. Genes in the common module were enriched in 190 interactive gene ontology (GO) functional clusters which provide potential disease mechanism. In conclusion, by analyzing gene networks we revealed a stress-affected common gene module among seven stress-related diseases/systems which provides insight into the process of stress induction of disease and suggests potential gene and pathway candidates for further research. |
format | Online Article Text |
id | pubmed-4526881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-45268812015-08-07 Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research Guo, Liyuan Du, Yang Wang, Jing Sci Rep Article Chronic stress (CS) was reported to associate with many complex diseases and stress-related diseases show strong comorbidity; however, molecular analyses have not been performed to date to evaluate common stress-induced biological processes across these diseases. We utilized networks constructed by genes from seven genetic databases of stress-related diseases or systems to explore the common mechanisms. Genes were connected based on the interaction information of proteins they encode. A common sub-network constructed by 561 overlapping genes and 8863 overlapping edges among seven networks was identified and it provides a common gene module among seven stress-related diseases/systems. This module is significantly overlapped with network that constructed by genes from the CS gene database. 36 genes with high connectivity (hub genes) were identified from seven networks as potential key genes in those diseases/systems, 33 of hub genes were included in the common module. Genes in the common module were enriched in 190 interactive gene ontology (GO) functional clusters which provide potential disease mechanism. In conclusion, by analyzing gene networks we revealed a stress-affected common gene module among seven stress-related diseases/systems which provides insight into the process of stress induction of disease and suggests potential gene and pathway candidates for further research. Nature Publishing Group 2015-08-06 /pmc/articles/PMC4526881/ /pubmed/26245528 http://dx.doi.org/10.1038/srep12939 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Guo, Liyuan Du, Yang Wang, Jing Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
title | Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
title_full | Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
title_fullStr | Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
title_full_unstemmed | Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
title_short | Network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
title_sort | network analysis reveals a stress-affected common gene module among seven stress-related diseases/systems which provides potential targets for mechanism research |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526881/ https://www.ncbi.nlm.nih.gov/pubmed/26245528 http://dx.doi.org/10.1038/srep12939 |
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