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Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China
Pyrus ussriensis Maxim. is native to the northern part of China, but whose habitats are currently being destroyed by environmental changes and human deforestation. An investigation of population structure and genetic diversity of wild Ussurian pear is a priority in order to acquire fundamental knowl...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529180/ https://www.ncbi.nlm.nih.gov/pubmed/26252516 http://dx.doi.org/10.1371/journal.pone.0133686 |
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author | Wuyun, Tana Amo, Hitomi Xu, Jingshi Ma, Teng Uematsu, Chiyomi Katayama, Hironori |
author_facet | Wuyun, Tana Amo, Hitomi Xu, Jingshi Ma, Teng Uematsu, Chiyomi Katayama, Hironori |
author_sort | Wuyun, Tana |
collection | PubMed |
description | Pyrus ussriensis Maxim. is native to the northern part of China, but whose habitats are currently being destroyed by environmental changes and human deforestation. An investigation of population structure and genetic diversity of wild Ussurian pear is a priority in order to acquire fundamental knowledge for conservation. A total of 153 individuals of wild Ussurian pear from the main habitats, Heilongjiang, Jilin, and Inner Mongolia in China, possessed low genetic diversity as a result of habitat fragmentation. The genetic diversity of the populations in Inner Mongolia and north east of Heilongjiang was especially low and there was the possibility of inbreeding. Wild Ussurian pears were divided into 5 groups based on the Bayesian clustering method using 20 nuclear SSRs (nSSRs) and 5 groups by haplotype distributions using 16 chloroplast SSRs (cpSSRs), and the populations in Inner Mongolia and north east of Heilongjiang represented unique genotypes. AMOVA indicated there was a 20.05% variation in nSSRs and a 44.40% variation in cpSSRs among populations. These values are relatively high when compared to those of other tree species. Haplotype E, positioned in the center of the cpSSR analysis network and showed the largest number of connections with other haplotypes, represented the most important haplotype. Inner Mongolia and the north east of Heilongjiang are two areas that need urgent conservation because of their genetic vulnerability and peculiarity. We determined 4 conservation units based on the clustering by nSSRs and cpSSRs, and geographic factor. This information is helpful in deciding the conservation strategies for wild Ussurian pear in China. |
format | Online Article Text |
id | pubmed-4529180 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45291802015-08-12 Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China Wuyun, Tana Amo, Hitomi Xu, Jingshi Ma, Teng Uematsu, Chiyomi Katayama, Hironori PLoS One Research Article Pyrus ussriensis Maxim. is native to the northern part of China, but whose habitats are currently being destroyed by environmental changes and human deforestation. An investigation of population structure and genetic diversity of wild Ussurian pear is a priority in order to acquire fundamental knowledge for conservation. A total of 153 individuals of wild Ussurian pear from the main habitats, Heilongjiang, Jilin, and Inner Mongolia in China, possessed low genetic diversity as a result of habitat fragmentation. The genetic diversity of the populations in Inner Mongolia and north east of Heilongjiang was especially low and there was the possibility of inbreeding. Wild Ussurian pears were divided into 5 groups based on the Bayesian clustering method using 20 nuclear SSRs (nSSRs) and 5 groups by haplotype distributions using 16 chloroplast SSRs (cpSSRs), and the populations in Inner Mongolia and north east of Heilongjiang represented unique genotypes. AMOVA indicated there was a 20.05% variation in nSSRs and a 44.40% variation in cpSSRs among populations. These values are relatively high when compared to those of other tree species. Haplotype E, positioned in the center of the cpSSR analysis network and showed the largest number of connections with other haplotypes, represented the most important haplotype. Inner Mongolia and the north east of Heilongjiang are two areas that need urgent conservation because of their genetic vulnerability and peculiarity. We determined 4 conservation units based on the clustering by nSSRs and cpSSRs, and geographic factor. This information is helpful in deciding the conservation strategies for wild Ussurian pear in China. Public Library of Science 2015-08-07 /pmc/articles/PMC4529180/ /pubmed/26252516 http://dx.doi.org/10.1371/journal.pone.0133686 Text en © 2015 Wuyun et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Wuyun, Tana Amo, Hitomi Xu, Jingshi Ma, Teng Uematsu, Chiyomi Katayama, Hironori Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China |
title | Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China |
title_full | Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China |
title_fullStr | Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China |
title_full_unstemmed | Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China |
title_short | Population Structure of and Conservation Strategies for Wild Pyrus ussuriensis Maxim. in China |
title_sort | population structure of and conservation strategies for wild pyrus ussuriensis maxim. in china |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529180/ https://www.ncbi.nlm.nih.gov/pubmed/26252516 http://dx.doi.org/10.1371/journal.pone.0133686 |
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