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A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate
Elongation factor G (EF-G), a translational GTPase responsible for tRNA-mRNA translocation possesses a conserved histidine (H91 in Escherichia coli) at the apex of switch-II, which has been implicated in GTPase activation and GTP hydrolysis. While H91A, H91R and H91E mutants showed different degrees...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532990/ https://www.ncbi.nlm.nih.gov/pubmed/26264741 http://dx.doi.org/10.1038/srep12970 |
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author | Kiran Koripella, Ravi Holm, Mikael Dourado, Daniel Mandava, Chandra Sekhar Flores, Samuel Sanyal, Suparna |
author_facet | Kiran Koripella, Ravi Holm, Mikael Dourado, Daniel Mandava, Chandra Sekhar Flores, Samuel Sanyal, Suparna |
author_sort | Kiran Koripella, Ravi |
collection | PubMed |
description | Elongation factor G (EF-G), a translational GTPase responsible for tRNA-mRNA translocation possesses a conserved histidine (H91 in Escherichia coli) at the apex of switch-II, which has been implicated in GTPase activation and GTP hydrolysis. While H91A, H91R and H91E mutants showed different degrees of defect in ribosome associated GTP hydrolysis, H91Q behaved like the WT. However, all these mutants, including H91Q, are much more defective in inorganic phosphate (Pi) release, thereby suggesting that H91 facilitates Pi release. In crystal structures of the ribosome bound EF-G•GTP a tight coupling between H91 and the γ-phosphate of GTP can be seen. Following GTP hydrolysis, H91 flips ~140° in the opposite direction, probably with Pi still coupled to it. This, we suggest, promotes Pi to detach from GDP and reach the inter-domain space of EF-G, which constitutes an exit path for the Pi. Molecular dynamics simulations are consistent with this hypothesis and demonstrate a vital role of an Mg(2+) ion in the process. |
format | Online Article Text |
id | pubmed-4532990 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-45329902015-08-12 A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate Kiran Koripella, Ravi Holm, Mikael Dourado, Daniel Mandava, Chandra Sekhar Flores, Samuel Sanyal, Suparna Sci Rep Article Elongation factor G (EF-G), a translational GTPase responsible for tRNA-mRNA translocation possesses a conserved histidine (H91 in Escherichia coli) at the apex of switch-II, which has been implicated in GTPase activation and GTP hydrolysis. While H91A, H91R and H91E mutants showed different degrees of defect in ribosome associated GTP hydrolysis, H91Q behaved like the WT. However, all these mutants, including H91Q, are much more defective in inorganic phosphate (Pi) release, thereby suggesting that H91 facilitates Pi release. In crystal structures of the ribosome bound EF-G•GTP a tight coupling between H91 and the γ-phosphate of GTP can be seen. Following GTP hydrolysis, H91 flips ~140° in the opposite direction, probably with Pi still coupled to it. This, we suggest, promotes Pi to detach from GDP and reach the inter-domain space of EF-G, which constitutes an exit path for the Pi. Molecular dynamics simulations are consistent with this hypothesis and demonstrate a vital role of an Mg(2+) ion in the process. Nature Publishing Group 2015-08-12 /pmc/articles/PMC4532990/ /pubmed/26264741 http://dx.doi.org/10.1038/srep12970 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Kiran Koripella, Ravi Holm, Mikael Dourado, Daniel Mandava, Chandra Sekhar Flores, Samuel Sanyal, Suparna A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate |
title | A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate |
title_full | A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate |
title_fullStr | A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate |
title_full_unstemmed | A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate |
title_short | A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate |
title_sort | conserved histidine in switch-ii of ef-g moderates release of inorganic phosphate |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532990/ https://www.ncbi.nlm.nih.gov/pubmed/26264741 http://dx.doi.org/10.1038/srep12970 |
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