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Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer

BACKGROUND: Citizen science, scientific research conducted by non-specialists, has the potential to facilitate biomedical research using available large-scale data, however validating the results is challenging. The Cell Slider is a citizen science project that intends to share images from tumors wi...

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Autores principales: Candido dos Reis, Francisco J., Lynn, Stuart, Ali, H. Raza, Eccles, Diana, Hanby, Andrew, Provenzano, Elena, Caldas, Carlos, Howat, William J., McDuffus, Leigh-Anne, Liu, Bin, Daley, Frances, Coulson, Penny, Vyas, Rupesh J., Harris, Leslie M., Owens, Joanna M., Carton, Amy F.M., McQuillan, Janette P., Paterson, Andy M., Hirji, Zohra, Christie, Sarah K., Holmes, Amber R., Schmidt, Marjanka K., Garcia-Closas, Montserrat, Easton, Douglas F., Bolla, Manjeet K., Wang, Qin, Benitez, Javier, Milne, Roger L., Mannermaa, Arto, Couch, Fergus, Devilee, Peter, Tollenaar, Robert A.E.M., Seynaeve, Caroline, Cox, Angela, Cross, Simon S., Blows, Fiona M., Sanders, Joyce, de Groot, Renate, Figueroa, Jonine, Sherman, Mark, Hooning, Maartje, Brenner, Hermann, Holleczek, Bernd, Stegmaier, Christa, Lintott, Chris, Pharoah, Paul D.P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4534635/
https://www.ncbi.nlm.nih.gov/pubmed/26288840
http://dx.doi.org/10.1016/j.ebiom.2015.05.009
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author Candido dos Reis, Francisco J.
Lynn, Stuart
Ali, H. Raza
Eccles, Diana
Hanby, Andrew
Provenzano, Elena
Caldas, Carlos
Howat, William J.
McDuffus, Leigh-Anne
Liu, Bin
Daley, Frances
Coulson, Penny
Vyas, Rupesh J.
Harris, Leslie M.
Owens, Joanna M.
Carton, Amy F.M.
McQuillan, Janette P.
Paterson, Andy M.
Hirji, Zohra
Christie, Sarah K.
Holmes, Amber R.
Schmidt, Marjanka K.
Garcia-Closas, Montserrat
Easton, Douglas F.
Bolla, Manjeet K.
Wang, Qin
Benitez, Javier
Milne, Roger L.
Mannermaa, Arto
Couch, Fergus
Devilee, Peter
Tollenaar, Robert A.E.M.
Seynaeve, Caroline
Cox, Angela
Cross, Simon S.
Blows, Fiona M.
Sanders, Joyce
de Groot, Renate
Figueroa, Jonine
Sherman, Mark
Hooning, Maartje
Brenner, Hermann
Holleczek, Bernd
Stegmaier, Christa
Lintott, Chris
Pharoah, Paul D.P.
author_facet Candido dos Reis, Francisco J.
Lynn, Stuart
Ali, H. Raza
Eccles, Diana
Hanby, Andrew
Provenzano, Elena
Caldas, Carlos
Howat, William J.
McDuffus, Leigh-Anne
Liu, Bin
Daley, Frances
Coulson, Penny
Vyas, Rupesh J.
Harris, Leslie M.
Owens, Joanna M.
Carton, Amy F.M.
McQuillan, Janette P.
Paterson, Andy M.
Hirji, Zohra
Christie, Sarah K.
Holmes, Amber R.
Schmidt, Marjanka K.
Garcia-Closas, Montserrat
Easton, Douglas F.
Bolla, Manjeet K.
Wang, Qin
Benitez, Javier
Milne, Roger L.
Mannermaa, Arto
Couch, Fergus
Devilee, Peter
Tollenaar, Robert A.E.M.
Seynaeve, Caroline
Cox, Angela
Cross, Simon S.
Blows, Fiona M.
Sanders, Joyce
de Groot, Renate
Figueroa, Jonine
Sherman, Mark
Hooning, Maartje
Brenner, Hermann
Holleczek, Bernd
Stegmaier, Christa
Lintott, Chris
Pharoah, Paul D.P.
author_sort Candido dos Reis, Francisco J.
collection PubMed
description BACKGROUND: Citizen science, scientific research conducted by non-specialists, has the potential to facilitate biomedical research using available large-scale data, however validating the results is challenging. The Cell Slider is a citizen science project that intends to share images from tumors with the general public, enabling them to score tumor markers independently through an internet-based interface. METHODS: From October 2012 to June 2014, 98,293 Citizen Scientists accessed the Cell Slider web page and scored 180,172 sub-images derived from images of 12,326 tissue microarray cores labeled for estrogen receptor (ER). We evaluated the accuracy of Citizen Scientist's ER classification, and the association between ER status and prognosis by comparing their test performance against trained pathologists. FINDINGS: The area under ROC curve was 0.95 (95% CI 0.94 to 0.96) for cancer cell identification and 0.97 (95% CI 0.96 to 0.97) for ER status. ER positive tumors scored by Citizen Scientists were associated with survival in a similar way to that scored by trained pathologists. Survival probability at 15 years were 0.78 (95% CI 0.76 to 0.80) for ER-positive and 0.72 (95% CI 0.68 to 0.77) for ER-negative tumors based on Citizen Scientists classification. Based on pathologist classification, survival probability was 0.79 (95% CI 0.77 to 0.81) for ER-positive and 0.71 (95% CI 0.67 to 0.74) for ER-negative tumors. The hazard ratio for death was 0.26 (95% CI 0.18 to 0.37) at diagnosis and became greater than one after 6.5 years of follow-up for ER scored by Citizen Scientists, and 0.24 (95% CI 0.18 to 0.33) at diagnosis increasing thereafter to one after 6.7 (95% CI 4.1 to 10.9) years of follow-up for ER scored by pathologists. INTERPRETATION: Crowdsourcing of the general public to classify cancer pathology data for research is viable, engages the public and provides accurate ER data. Crowdsourced classification of research data may offer a valid solution to problems of throughput requiring human input.
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spelling pubmed-45346352015-08-18 Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer Candido dos Reis, Francisco J. Lynn, Stuart Ali, H. Raza Eccles, Diana Hanby, Andrew Provenzano, Elena Caldas, Carlos Howat, William J. McDuffus, Leigh-Anne Liu, Bin Daley, Frances Coulson, Penny Vyas, Rupesh J. Harris, Leslie M. Owens, Joanna M. Carton, Amy F.M. McQuillan, Janette P. Paterson, Andy M. Hirji, Zohra Christie, Sarah K. Holmes, Amber R. Schmidt, Marjanka K. Garcia-Closas, Montserrat Easton, Douglas F. Bolla, Manjeet K. Wang, Qin Benitez, Javier Milne, Roger L. Mannermaa, Arto Couch, Fergus Devilee, Peter Tollenaar, Robert A.E.M. Seynaeve, Caroline Cox, Angela Cross, Simon S. Blows, Fiona M. Sanders, Joyce de Groot, Renate Figueroa, Jonine Sherman, Mark Hooning, Maartje Brenner, Hermann Holleczek, Bernd Stegmaier, Christa Lintott, Chris Pharoah, Paul D.P. EBioMedicine Original Article BACKGROUND: Citizen science, scientific research conducted by non-specialists, has the potential to facilitate biomedical research using available large-scale data, however validating the results is challenging. The Cell Slider is a citizen science project that intends to share images from tumors with the general public, enabling them to score tumor markers independently through an internet-based interface. METHODS: From October 2012 to June 2014, 98,293 Citizen Scientists accessed the Cell Slider web page and scored 180,172 sub-images derived from images of 12,326 tissue microarray cores labeled for estrogen receptor (ER). We evaluated the accuracy of Citizen Scientist's ER classification, and the association between ER status and prognosis by comparing their test performance against trained pathologists. FINDINGS: The area under ROC curve was 0.95 (95% CI 0.94 to 0.96) for cancer cell identification and 0.97 (95% CI 0.96 to 0.97) for ER status. ER positive tumors scored by Citizen Scientists were associated with survival in a similar way to that scored by trained pathologists. Survival probability at 15 years were 0.78 (95% CI 0.76 to 0.80) for ER-positive and 0.72 (95% CI 0.68 to 0.77) for ER-negative tumors based on Citizen Scientists classification. Based on pathologist classification, survival probability was 0.79 (95% CI 0.77 to 0.81) for ER-positive and 0.71 (95% CI 0.67 to 0.74) for ER-negative tumors. The hazard ratio for death was 0.26 (95% CI 0.18 to 0.37) at diagnosis and became greater than one after 6.5 years of follow-up for ER scored by Citizen Scientists, and 0.24 (95% CI 0.18 to 0.33) at diagnosis increasing thereafter to one after 6.7 (95% CI 4.1 to 10.9) years of follow-up for ER scored by pathologists. INTERPRETATION: Crowdsourcing of the general public to classify cancer pathology data for research is viable, engages the public and provides accurate ER data. Crowdsourced classification of research data may offer a valid solution to problems of throughput requiring human input. Elsevier 2015-05-09 /pmc/articles/PMC4534635/ /pubmed/26288840 http://dx.doi.org/10.1016/j.ebiom.2015.05.009 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Original Article
Candido dos Reis, Francisco J.
Lynn, Stuart
Ali, H. Raza
Eccles, Diana
Hanby, Andrew
Provenzano, Elena
Caldas, Carlos
Howat, William J.
McDuffus, Leigh-Anne
Liu, Bin
Daley, Frances
Coulson, Penny
Vyas, Rupesh J.
Harris, Leslie M.
Owens, Joanna M.
Carton, Amy F.M.
McQuillan, Janette P.
Paterson, Andy M.
Hirji, Zohra
Christie, Sarah K.
Holmes, Amber R.
Schmidt, Marjanka K.
Garcia-Closas, Montserrat
Easton, Douglas F.
Bolla, Manjeet K.
Wang, Qin
Benitez, Javier
Milne, Roger L.
Mannermaa, Arto
Couch, Fergus
Devilee, Peter
Tollenaar, Robert A.E.M.
Seynaeve, Caroline
Cox, Angela
Cross, Simon S.
Blows, Fiona M.
Sanders, Joyce
de Groot, Renate
Figueroa, Jonine
Sherman, Mark
Hooning, Maartje
Brenner, Hermann
Holleczek, Bernd
Stegmaier, Christa
Lintott, Chris
Pharoah, Paul D.P.
Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
title Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
title_full Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
title_fullStr Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
title_full_unstemmed Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
title_short Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer
title_sort crowdsourcing the general public for large scale molecular pathology studies in cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4534635/
https://www.ncbi.nlm.nih.gov/pubmed/26288840
http://dx.doi.org/10.1016/j.ebiom.2015.05.009
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