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Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach

Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This...

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Autores principales: Panda, Amrita Kumari, Bisht, Satpal Singh, Kumar, Nachimuthu Senthil, De Mandal, Surajit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535621/
https://www.ncbi.nlm.nih.gov/pubmed/26484205
http://dx.doi.org/10.1016/j.gdata.2015.04.016
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author Panda, Amrita Kumari
Bisht, Satpal Singh
Kumar, Nachimuthu Senthil
De Mandal, Surajit
author_facet Panda, Amrita Kumari
Bisht, Satpal Singh
Kumar, Nachimuthu Senthil
De Mandal, Surajit
author_sort Panda, Amrita Kumari
collection PubMed
description Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This is the first report on V3 hyper-variable region of 16S rDNA metagenome sequence employing Illumina platform to profile the microbial community of this less known hot spring from Meghalaya, India. Metagenome comprised of 10, 74,120 raw sequences with a sequence length of 151 bp and 56.35% G + C content. Metagenome sequence information is now available at NCBI, SRA database accession no. SRP056897. A total of 8, 77, 364 pre-processed reads were clustered into 694 OTUs (operational taxonomical units) comprising of 14 bacterial phyla including unknown phylum demonstrating 49 families. Hot spring bacterial community is dominated by Firmicutes (61.60%), Chloroflexi (21.37%), Cyanobacteria (12.96%) and unclassified bacteria (1.2%) respectively.
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spelling pubmed-45356212015-10-19 Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach Panda, Amrita Kumari Bisht, Satpal Singh Kumar, Nachimuthu Senthil De Mandal, Surajit Genom Data Data in Brief Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This is the first report on V3 hyper-variable region of 16S rDNA metagenome sequence employing Illumina platform to profile the microbial community of this less known hot spring from Meghalaya, India. Metagenome comprised of 10, 74,120 raw sequences with a sequence length of 151 bp and 56.35% G + C content. Metagenome sequence information is now available at NCBI, SRA database accession no. SRP056897. A total of 8, 77, 364 pre-processed reads were clustered into 694 OTUs (operational taxonomical units) comprising of 14 bacterial phyla including unknown phylum demonstrating 49 families. Hot spring bacterial community is dominated by Firmicutes (61.60%), Chloroflexi (21.37%), Cyanobacteria (12.96%) and unclassified bacteria (1.2%) respectively. Elsevier 2015-04-28 /pmc/articles/PMC4535621/ /pubmed/26484205 http://dx.doi.org/10.1016/j.gdata.2015.04.016 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Panda, Amrita Kumari
Bisht, Satpal Singh
Kumar, Nachimuthu Senthil
De Mandal, Surajit
Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
title Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
title_full Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
title_fullStr Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
title_full_unstemmed Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
title_short Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
title_sort investigations on microbial diversity of jakrem hot spring, meghalaya, india using cultivation-independent approach
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535621/
https://www.ncbi.nlm.nih.gov/pubmed/26484205
http://dx.doi.org/10.1016/j.gdata.2015.04.016
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