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Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach
Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535621/ https://www.ncbi.nlm.nih.gov/pubmed/26484205 http://dx.doi.org/10.1016/j.gdata.2015.04.016 |
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author | Panda, Amrita Kumari Bisht, Satpal Singh Kumar, Nachimuthu Senthil De Mandal, Surajit |
author_facet | Panda, Amrita Kumari Bisht, Satpal Singh Kumar, Nachimuthu Senthil De Mandal, Surajit |
author_sort | Panda, Amrita Kumari |
collection | PubMed |
description | Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This is the first report on V3 hyper-variable region of 16S rDNA metagenome sequence employing Illumina platform to profile the microbial community of this less known hot spring from Meghalaya, India. Metagenome comprised of 10, 74,120 raw sequences with a sequence length of 151 bp and 56.35% G + C content. Metagenome sequence information is now available at NCBI, SRA database accession no. SRP056897. A total of 8, 77, 364 pre-processed reads were clustered into 694 OTUs (operational taxonomical units) comprising of 14 bacterial phyla including unknown phylum demonstrating 49 families. Hot spring bacterial community is dominated by Firmicutes (61.60%), Chloroflexi (21.37%), Cyanobacteria (12.96%) and unclassified bacteria (1.2%) respectively. |
format | Online Article Text |
id | pubmed-4535621 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-45356212015-10-19 Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach Panda, Amrita Kumari Bisht, Satpal Singh Kumar, Nachimuthu Senthil De Mandal, Surajit Genom Data Data in Brief Jakrem hot water spring is located in the West Khasi Hill District of the state of Meghalaya, and is one of the most popular hot springs of the state. There is a populist belief among the inhabitants and people that the hot spring water has got curative properties against various skin ailments. This is the first report on V3 hyper-variable region of 16S rDNA metagenome sequence employing Illumina platform to profile the microbial community of this less known hot spring from Meghalaya, India. Metagenome comprised of 10, 74,120 raw sequences with a sequence length of 151 bp and 56.35% G + C content. Metagenome sequence information is now available at NCBI, SRA database accession no. SRP056897. A total of 8, 77, 364 pre-processed reads were clustered into 694 OTUs (operational taxonomical units) comprising of 14 bacterial phyla including unknown phylum demonstrating 49 families. Hot spring bacterial community is dominated by Firmicutes (61.60%), Chloroflexi (21.37%), Cyanobacteria (12.96%) and unclassified bacteria (1.2%) respectively. Elsevier 2015-04-28 /pmc/articles/PMC4535621/ /pubmed/26484205 http://dx.doi.org/10.1016/j.gdata.2015.04.016 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Panda, Amrita Kumari Bisht, Satpal Singh Kumar, Nachimuthu Senthil De Mandal, Surajit Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach |
title | Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach |
title_full | Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach |
title_fullStr | Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach |
title_full_unstemmed | Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach |
title_short | Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach |
title_sort | investigations on microbial diversity of jakrem hot spring, meghalaya, india using cultivation-independent approach |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535621/ https://www.ncbi.nlm.nih.gov/pubmed/26484205 http://dx.doi.org/10.1016/j.gdata.2015.04.016 |
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