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Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach

Here, we report metagenome from the Tuwa hot spring, India using shotgun sequencing approach. Metagenome consisted of 541,379 sequences with 98.7 Mbps size with 46% G + C content. Metagenomic sequence reads were deposited into the EMBL database under accession number ERP009321. Community analysis pr...

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Autores principales: Mangrola, Amitsinh, Dudhagara, Pravin, Koringa, Prakash, Joshi, C.G., Parmar, Mansi, Patel, Rajesh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535658/
https://www.ncbi.nlm.nih.gov/pubmed/26484204
http://dx.doi.org/10.1016/j.gdata.2015.04.014
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author Mangrola, Amitsinh
Dudhagara, Pravin
Koringa, Prakash
Joshi, C.G.
Parmar, Mansi
Patel, Rajesh
author_facet Mangrola, Amitsinh
Dudhagara, Pravin
Koringa, Prakash
Joshi, C.G.
Parmar, Mansi
Patel, Rajesh
author_sort Mangrola, Amitsinh
collection PubMed
description Here, we report metagenome from the Tuwa hot spring, India using shotgun sequencing approach. Metagenome consisted of 541,379 sequences with 98.7 Mbps size with 46% G + C content. Metagenomic sequence reads were deposited into the EMBL database under accession number ERP009321. Community analysis presented 99.1% sequences belong to bacteria, 0.3% of eukaryotic origin, 0.2% virus derived and 0.05% from archea. Unclassified and unidentified sequences were 0.4% and 0.07% respectively. A total of 22 bacterial phyla include 90 families and 201 species were observed in the hot spring metagenome. Firmicutes (97.0%), Proteobacteria (1.3%) and Actinobacteria (0.4%) were reported as dominant bacterial phyla. In functional analysis using Cluster of Orthologous Group (COG), 21.5% drops in the poorly characterized group. Using subsystem based annotation, 4.0% genes were assigned for stress responses and 3% genes were fit into the metabolism of aromatic compounds. The hot spring metagenome is very rich with novel sequences affiliated to unclassified and unidentified lineages, suggesting the potential source for novel microbial species and their products.
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spelling pubmed-45356582015-10-19 Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach Mangrola, Amitsinh Dudhagara, Pravin Koringa, Prakash Joshi, C.G. Parmar, Mansi Patel, Rajesh Genom Data Data in Brief Here, we report metagenome from the Tuwa hot spring, India using shotgun sequencing approach. Metagenome consisted of 541,379 sequences with 98.7 Mbps size with 46% G + C content. Metagenomic sequence reads were deposited into the EMBL database under accession number ERP009321. Community analysis presented 99.1% sequences belong to bacteria, 0.3% of eukaryotic origin, 0.2% virus derived and 0.05% from archea. Unclassified and unidentified sequences were 0.4% and 0.07% respectively. A total of 22 bacterial phyla include 90 families and 201 species were observed in the hot spring metagenome. Firmicutes (97.0%), Proteobacteria (1.3%) and Actinobacteria (0.4%) were reported as dominant bacterial phyla. In functional analysis using Cluster of Orthologous Group (COG), 21.5% drops in the poorly characterized group. Using subsystem based annotation, 4.0% genes were assigned for stress responses and 3% genes were fit into the metabolism of aromatic compounds. The hot spring metagenome is very rich with novel sequences affiliated to unclassified and unidentified lineages, suggesting the potential source for novel microbial species and their products. Elsevier 2015-04-20 /pmc/articles/PMC4535658/ /pubmed/26484204 http://dx.doi.org/10.1016/j.gdata.2015.04.014 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Mangrola, Amitsinh
Dudhagara, Pravin
Koringa, Prakash
Joshi, C.G.
Parmar, Mansi
Patel, Rajesh
Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach
title Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach
title_full Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach
title_fullStr Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach
title_full_unstemmed Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach
title_short Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach
title_sort deciphering the microbiota of tuwa hot spring, india using shotgun metagenomic sequencing approach
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535658/
https://www.ncbi.nlm.nih.gov/pubmed/26484204
http://dx.doi.org/10.1016/j.gdata.2015.04.014
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