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Time course transcriptional profiling of senescing barley leaves
Cell senescence occurs as a part of developmental or stress-induced process. It is tightly regulated and involves a sequence of metabolic and structural alterations, eventually leading to cell death. Dark-induced leaf senescence is a useful model for studying senescence-related events. To facilitate...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535845/ https://www.ncbi.nlm.nih.gov/pubmed/26484183 http://dx.doi.org/10.1016/j.gdata.2015.03.006 |
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author | Zmienko, Agnieszka Goralski, Michal Samelak-Czajka, Anna Sobieszczuk-Nowicka, Ewa Figlerowicz, Marek |
author_facet | Zmienko, Agnieszka Goralski, Michal Samelak-Czajka, Anna Sobieszczuk-Nowicka, Ewa Figlerowicz, Marek |
author_sort | Zmienko, Agnieszka |
collection | PubMed |
description | Cell senescence occurs as a part of developmental or stress-induced process. It is tightly regulated and involves a sequence of metabolic and structural alterations, eventually leading to cell death. Dark-induced leaf senescence is a useful model for studying senescence-related events. To facilitate the integration of physiological and molecular studies utilizing this model, we generated the microarray data set providing time course gene expression profiles in senescing barley leaves. Here, we describe the detailed procedures and data analysis scheme of our experiment. The entire data set (available at NCBI/GEO database under GSE62539) has been successively explored to find the genes differentially expressed during the senescence process as well as to identify genes with the invariant expression as reliable references for qPCR or ddPCR experiments. |
format | Online Article Text |
id | pubmed-4535845 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-45358452015-10-19 Time course transcriptional profiling of senescing barley leaves Zmienko, Agnieszka Goralski, Michal Samelak-Czajka, Anna Sobieszczuk-Nowicka, Ewa Figlerowicz, Marek Genom Data Data in Brief Cell senescence occurs as a part of developmental or stress-induced process. It is tightly regulated and involves a sequence of metabolic and structural alterations, eventually leading to cell death. Dark-induced leaf senescence is a useful model for studying senescence-related events. To facilitate the integration of physiological and molecular studies utilizing this model, we generated the microarray data set providing time course gene expression profiles in senescing barley leaves. Here, we describe the detailed procedures and data analysis scheme of our experiment. The entire data set (available at NCBI/GEO database under GSE62539) has been successively explored to find the genes differentially expressed during the senescence process as well as to identify genes with the invariant expression as reliable references for qPCR or ddPCR experiments. Elsevier 2015-03-28 /pmc/articles/PMC4535845/ /pubmed/26484183 http://dx.doi.org/10.1016/j.gdata.2015.03.006 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Zmienko, Agnieszka Goralski, Michal Samelak-Czajka, Anna Sobieszczuk-Nowicka, Ewa Figlerowicz, Marek Time course transcriptional profiling of senescing barley leaves |
title | Time course transcriptional profiling of senescing barley leaves |
title_full | Time course transcriptional profiling of senescing barley leaves |
title_fullStr | Time course transcriptional profiling of senescing barley leaves |
title_full_unstemmed | Time course transcriptional profiling of senescing barley leaves |
title_short | Time course transcriptional profiling of senescing barley leaves |
title_sort | time course transcriptional profiling of senescing barley leaves |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535845/ https://www.ncbi.nlm.nih.gov/pubmed/26484183 http://dx.doi.org/10.1016/j.gdata.2015.03.006 |
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