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Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6%...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535861/ https://www.ncbi.nlm.nih.gov/pubmed/26484187 http://dx.doi.org/10.1016/j.gdata.2015.03.014 |
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author | Basak, Pijush Pramanik, Arnab Roy, Ranita Chattopadhyay, Dhrubajyoti Bhattacharyya, Maitree |
author_facet | Basak, Pijush Pramanik, Arnab Roy, Ranita Chattopadhyay, Dhrubajyoti Bhattacharyya, Maitree |
author_sort | Basak, Pijush |
collection | PubMed |
description | In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6% G + C content. Metagenome data of this study are available at NCBI under the Biosample data base accession no. SRX883521. The taxonomic analysis of 2746 species belonged to 33 different phyla revealing the dominance of Proteobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Acidobacteria, Nitrospirae and Actinobacteria respectively. Remarkably less than 5.0% sequences belong to a poorly characterized group. Our pyrosequencing data report unfolds the bacterial community profile at different depth of soil sediment indicating the changing community pattern, in the light of specific chronology. |
format | Online Article Text |
id | pubmed-4535861 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-45358612015-10-19 Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics Basak, Pijush Pramanik, Arnab Roy, Ranita Chattopadhyay, Dhrubajyoti Bhattacharyya, Maitree Genom Data Data in Brief In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6% G + C content. Metagenome data of this study are available at NCBI under the Biosample data base accession no. SRX883521. The taxonomic analysis of 2746 species belonged to 33 different phyla revealing the dominance of Proteobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Acidobacteria, Nitrospirae and Actinobacteria respectively. Remarkably less than 5.0% sequences belong to a poorly characterized group. Our pyrosequencing data report unfolds the bacterial community profile at different depth of soil sediment indicating the changing community pattern, in the light of specific chronology. Elsevier 2015-04-07 /pmc/articles/PMC4535861/ /pubmed/26484187 http://dx.doi.org/10.1016/j.gdata.2015.03.014 Text en © 2015 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Basak, Pijush Pramanik, Arnab Roy, Ranita Chattopadhyay, Dhrubajyoti Bhattacharyya, Maitree Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
title | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
title_full | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
title_fullStr | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
title_full_unstemmed | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
title_short | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
title_sort | cataloguing the bacterial diversity of the sundarbans mangrove, india in the light of metagenomics |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535861/ https://www.ncbi.nlm.nih.gov/pubmed/26484187 http://dx.doi.org/10.1016/j.gdata.2015.03.014 |
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