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Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics

In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6%...

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Detalles Bibliográficos
Autores principales: Basak, Pijush, Pramanik, Arnab, Roy, Ranita, Chattopadhyay, Dhrubajyoti, Bhattacharyya, Maitree
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535861/
https://www.ncbi.nlm.nih.gov/pubmed/26484187
http://dx.doi.org/10.1016/j.gdata.2015.03.014
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author Basak, Pijush
Pramanik, Arnab
Roy, Ranita
Chattopadhyay, Dhrubajyoti
Bhattacharyya, Maitree
author_facet Basak, Pijush
Pramanik, Arnab
Roy, Ranita
Chattopadhyay, Dhrubajyoti
Bhattacharyya, Maitree
author_sort Basak, Pijush
collection PubMed
description In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6% G + C content. Metagenome data of this study are available at NCBI under the Biosample data base accession no. SRX883521. The taxonomic analysis of 2746 species belonged to 33 different phyla revealing the dominance of Proteobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Acidobacteria, Nitrospirae and Actinobacteria respectively. Remarkably less than 5.0% sequences belong to a poorly characterized group. Our pyrosequencing data report unfolds the bacterial community profile at different depth of soil sediment indicating the changing community pattern, in the light of specific chronology.
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spelling pubmed-45358612015-10-19 Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics Basak, Pijush Pramanik, Arnab Roy, Ranita Chattopadhyay, Dhrubajyoti Bhattacharyya, Maitree Genom Data Data in Brief In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6% G + C content. Metagenome data of this study are available at NCBI under the Biosample data base accession no. SRX883521. The taxonomic analysis of 2746 species belonged to 33 different phyla revealing the dominance of Proteobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Acidobacteria, Nitrospirae and Actinobacteria respectively. Remarkably less than 5.0% sequences belong to a poorly characterized group. Our pyrosequencing data report unfolds the bacterial community profile at different depth of soil sediment indicating the changing community pattern, in the light of specific chronology. Elsevier 2015-04-07 /pmc/articles/PMC4535861/ /pubmed/26484187 http://dx.doi.org/10.1016/j.gdata.2015.03.014 Text en © 2015 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Basak, Pijush
Pramanik, Arnab
Roy, Ranita
Chattopadhyay, Dhrubajyoti
Bhattacharyya, Maitree
Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
title Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
title_full Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
title_fullStr Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
title_full_unstemmed Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
title_short Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
title_sort cataloguing the bacterial diversity of the sundarbans mangrove, india in the light of metagenomics
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535861/
https://www.ncbi.nlm.nih.gov/pubmed/26484187
http://dx.doi.org/10.1016/j.gdata.2015.03.014
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