Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)

We report the 9.2 Mb genome of the azureomycin A and B antibiotic producing strain Amycolatopsis azurea isolated from a Japanese soil sample. The draft genome of strain DSM 43854(T) consists of 9,223,451 bp with a G + C content of 69.0% and the genome contains 3 rRNA genes (5S–23S–16S) and 58 aminoa...

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Autores principales: Khatri, Indu, Subramanian, Srikrishna, Mayilraj, Shanmugam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2014
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4536004/
https://www.ncbi.nlm.nih.gov/pubmed/26484067
http://dx.doi.org/10.1016/j.gdata.2013.12.003
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author Khatri, Indu
Subramanian, Srikrishna
Mayilraj, Shanmugam
author_facet Khatri, Indu
Subramanian, Srikrishna
Mayilraj, Shanmugam
author_sort Khatri, Indu
collection PubMed
description We report the 9.2 Mb genome of the azureomycin A and B antibiotic producing strain Amycolatopsis azurea isolated from a Japanese soil sample. The draft genome of strain DSM 43854(T) consists of 9,223,451 bp with a G + C content of 69.0% and the genome contains 3 rRNA genes (5S–23S–16S) and 58 aminoacyl-tRNA synthetase genes. The homology searches revealed that the PKS gene clusters are supposed to be responsible for the biosynthesis of naptomycin, macbecin, rifamycin, mitomycin, maduropeptin enediyne, neocarzinostatin enediyne, C-1027 enediyne, calicheamicin enediyne, landomycin, simocyclinone, medermycin, granaticin, polyketomycin, teicoplanin, balhimycin, vancomycin, staurosporine, rubradirin and complestatin.
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spelling pubmed-45360042015-10-19 Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T) Khatri, Indu Subramanian, Srikrishna Mayilraj, Shanmugam Genom Data Data in Brief We report the 9.2 Mb genome of the azureomycin A and B antibiotic producing strain Amycolatopsis azurea isolated from a Japanese soil sample. The draft genome of strain DSM 43854(T) consists of 9,223,451 bp with a G + C content of 69.0% and the genome contains 3 rRNA genes (5S–23S–16S) and 58 aminoacyl-tRNA synthetase genes. The homology searches revealed that the PKS gene clusters are supposed to be responsible for the biosynthesis of naptomycin, macbecin, rifamycin, mitomycin, maduropeptin enediyne, neocarzinostatin enediyne, C-1027 enediyne, calicheamicin enediyne, landomycin, simocyclinone, medermycin, granaticin, polyketomycin, teicoplanin, balhimycin, vancomycin, staurosporine, rubradirin and complestatin. Elsevier 2014-03-12 /pmc/articles/PMC4536004/ /pubmed/26484067 http://dx.doi.org/10.1016/j.gdata.2013.12.003 Text en © 2014 The Authors http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/).
spellingShingle Data in Brief
Khatri, Indu
Subramanian, Srikrishna
Mayilraj, Shanmugam
Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)
title Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)
title_full Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)
title_fullStr Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)
title_full_unstemmed Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)
title_short Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T)
title_sort genome sequencing and annotation of amycolatopsis azurea dsm 43854(t)
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4536004/
https://www.ncbi.nlm.nih.gov/pubmed/26484067
http://dx.doi.org/10.1016/j.gdata.2013.12.003
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