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Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix
BACKGROUND: Life history traits like developmental time, age and size at maturity are directly related to fitness in all organisms and play a major role in adaptive evolution and speciation processes. Comparative genomic or transcriptomic approaches to identify positively selected genes involved in...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539673/ https://www.ncbi.nlm.nih.gov/pubmed/26281847 http://dx.doi.org/10.1186/s12862-015-0434-x |
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author | Feldmeyer, Barbara Greshake, Bastian Funke, Elisabeth Ebersberger, Ingo Pfenninger, Markus |
author_facet | Feldmeyer, Barbara Greshake, Bastian Funke, Elisabeth Ebersberger, Ingo Pfenninger, Markus |
author_sort | Feldmeyer, Barbara |
collection | PubMed |
description | BACKGROUND: Life history traits like developmental time, age and size at maturity are directly related to fitness in all organisms and play a major role in adaptive evolution and speciation processes. Comparative genomic or transcriptomic approaches to identify positively selected genes involved in species divergence can help to generate hypotheses on the driving forces behind speciation. Here we use a bottom-up approach to investigate this hypothesis by comparative analysis of orthologous transcripts of four closely related European Radix species. RESULTS: Snails of the genus Radix occupy species specific distribution ranges with distinct climatic niches, indicating a potential for natural selection driven speciation based on ecological niche differentiation. We then inferred phylogenetic relationships among the four Radix species based on whole mt-genomes plus 23 nuclear loci. Three different tests to infer selection and changes in amino acid properties yielded a total of 134 genes with signatures of positive selection. The majority of these genes belonged to the functional gene ontology categories “reproduction” and “genitalia” with an overrepresentation of the functions “development” and “growth rate”. CONCLUSIONS: We show here that Radix species divergence may be primarily enforced by selection on life history traits such as (larval-) development and growth rate. We thus hypothesise that life history differences may confer advantages under the according climate regimes, e.g., species occupying warmer and dryer habitats might have a fitness advantage with fast developing susceptible life stages, which are more tolerant to habitat desiccation. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-015-0434-x) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4539673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45396732015-08-19 Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix Feldmeyer, Barbara Greshake, Bastian Funke, Elisabeth Ebersberger, Ingo Pfenninger, Markus BMC Evol Biol Research Article BACKGROUND: Life history traits like developmental time, age and size at maturity are directly related to fitness in all organisms and play a major role in adaptive evolution and speciation processes. Comparative genomic or transcriptomic approaches to identify positively selected genes involved in species divergence can help to generate hypotheses on the driving forces behind speciation. Here we use a bottom-up approach to investigate this hypothesis by comparative analysis of orthologous transcripts of four closely related European Radix species. RESULTS: Snails of the genus Radix occupy species specific distribution ranges with distinct climatic niches, indicating a potential for natural selection driven speciation based on ecological niche differentiation. We then inferred phylogenetic relationships among the four Radix species based on whole mt-genomes plus 23 nuclear loci. Three different tests to infer selection and changes in amino acid properties yielded a total of 134 genes with signatures of positive selection. The majority of these genes belonged to the functional gene ontology categories “reproduction” and “genitalia” with an overrepresentation of the functions “development” and “growth rate”. CONCLUSIONS: We show here that Radix species divergence may be primarily enforced by selection on life history traits such as (larval-) development and growth rate. We thus hypothesise that life history differences may confer advantages under the according climate regimes, e.g., species occupying warmer and dryer habitats might have a fitness advantage with fast developing susceptible life stages, which are more tolerant to habitat desiccation. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-015-0434-x) contains supplementary material, which is available to authorized users. BioMed Central 2015-08-19 /pmc/articles/PMC4539673/ /pubmed/26281847 http://dx.doi.org/10.1186/s12862-015-0434-x Text en © Feldmeyer et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Feldmeyer, Barbara Greshake, Bastian Funke, Elisabeth Ebersberger, Ingo Pfenninger, Markus Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix |
title | Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix |
title_full | Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix |
title_fullStr | Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix |
title_full_unstemmed | Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix |
title_short | Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix |
title_sort | positive selection in development and growth rate regulation genes involved in species divergence of the genus radix |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539673/ https://www.ncbi.nlm.nih.gov/pubmed/26281847 http://dx.doi.org/10.1186/s12862-015-0434-x |
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