Cargando…

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution

Microbial rhodopsins are a diverse group of photoactive transmembrane proteins found in all three domains of life and in viruses. Today, microbial rhodopsin research is a flourishing research field in which new understandings of rhodopsin diversity, function and evolution are contributing to broader...

Descripción completa

Detalles Bibliográficos
Autores principales:	Boeuf, Dominique, Audic, Stéphane, Brillet-Guéguen, Loraine, Caron, Christophe, Jeanthon, Christian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2015
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539915/ https://www.ncbi.nlm.nih.gov/pubmed/26286928 http://dx.doi.org/10.1093/database/bav080

Ejemplares similares

Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity
por: Barbeyron, Tristan, et al.
Publicado: (2016)

Convergent evolution of animal and microbial rhodopsins
por: Kojima, Keiichi, et al.
Publicado: (2023)

The Evolutionary Relationship between Microbial Rhodopsins and Metazoan Rhodopsins
por: Shen, Libing, et al.
Publicado: (2013)

Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins
por: Kwon, Soon-Kyeong, et al.
Publicado: (2020)

Correction: Convergent evolution of animal and microbial rhodopsins
por: Kojima, Keiichi, et al.
Publicado: (2023)

Ion-pumping microbial rhodopsins
por: Kandori, Hideki
Publicado: (2015)

Imaging Voltage with Microbial Rhodopsins
por: Zhang, Xiao Min, et al.
Publicado: (2021)

Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean
por: Boeuf, Dominique, et al.
Publicado: (2016)

Biogeographic patterns of aerobic anoxygenic phototrophic bacteria reveal an ecological consistency of phylogenetic clades in different oceanic biomes
por: Lehours, Anne-Catherine, et al.
Publicado: (2018)

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data
por: Varet, Hugo, et al.
Publicado: (2016)

A Nanoscale Study of Carbon and Nitrogen Fluxes in Mats of Purple Sulfur Bacteria: Implications for Carbon Cycling at the Surface of Coastal Sediments
por: Hubas, Cédric, et al.
Publicado: (2017)

Rho enhancers play unexpectedly minor roles in Rhodopsin transcription and rod cell integrity
por: Sun, Chi, et al.
Publicado: (2023)

Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
por: Ernst, Oliver P., et al.
Publicado: (2013)

Sequence and intramolecular distance scoring analyses of microbial rhodopsins
por: Asano, Miki, et al.
Publicado: (2016)

Chimeric microbial rhodopsins for optical activation of Gs-proteins
por: Yoshida, Kazuho, et al.
Publicado: (2017)

Rhodopsin 7–The unusual Rhodopsin in Drosophila
por: Senthilan, Pingkalai R., et al.
Publicado: (2016)

Microbial rhodopsins: wide distribution, rich diversity and great potential
por: Kurihara, Marie, et al.
Publicado: (2015)

Functional metagenomic screen reveals new and diverse microbial rhodopsins
por: Pushkarev, Alina, et al.
Publicado: (2016)

Microbial rhodopsins are major contributors to the solar energy captured in the sea
por: Gómez-Consarnau, Laura, et al.
Publicado: (2019)

Expression analysis of microbial rhodopsin-like genes in Guillardia theta
por: Konno, Masae, et al.
Publicado: (2020)

Discovery of a microbial rhodopsin that is the most stable in extreme environments
por: Shim, Jin-gon, et al.
Publicado: (2021)

Earliest Photic Zone Niches Probed by Ancestral Microbial Rhodopsins
por: Sephus, Cathryn D., et al.
Publicado: (2022)

MIC database: A collection of antimicrobial compounds from literature
por: Babu, Padavala Ajay, et al.
Publicado: (2009)

MicNet toolbox: Visualizing and unraveling a microbial network
por: Favila, Natalia, et al.
Publicado: (2022)

Effect of Organic Manure and Moisture Regimes on Soil Physiochemical Properties, Microbial Biomass C(mic):N(mic):P(mic) Turnover and Yield of Mustard Grains in Arid Climate
por: Bhanwaria, Rajendra, et al.
Publicado: (2022)

AMDB: a database of animal gut microbial communities with manually curated metadata
por: Yang, Junwon, et al.
Publicado: (2021)

PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution
por: Mahé, Stéphane, et al.
Publicado: (2012)

MIC1 and MIC3: partners in invasion
por: Van Epps, Heather L.
Publicado: (2005)

Evolution of rhodopsin ion pumps in haloarchaea
por: Sharma, Adrian K, et al.
Publicado: (2007)

An Empirical Test of Convergent Evolution in Rhodopsins
por: Mackin, Kristine A., et al.
Publicado: (2014)

Structure-based insights into evolution of rhodopsins
por: Zabelskii, Dmitrii, et al.
Publicado: (2021)

PKIDB: A Curated, Annotated and Updated Database of Protein Kinase Inhibitors in Clinical Trials
por: Carles, Fabrice, et al.
Publicado: (2018)

THE MOLECULAR WEIGHT OF RHODOPSIN AND THE NATURE OF THE RHODOPSIN-DIGITONIN COMPLEX
por: Hubbard, Ruth
Publicado: (1954)

All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins
por: Hochbaum, Daniel R., et al.
Publicado: (2014)

Ion-pumping microbial rhodopsin protein classification by machine learning approach
por: Selvaraj, Muthu Krishnan, et al.
Publicado: (2023)

Effects of Pathogenic Variations in the Human Rhodopsin Gene (hRHO) on the Predicted Accessibility for a Lead Candidate Ribozyme
por: Froebel, Beau R., et al.
Publicado: (2017)

ON RHODOPSIN IN SOLUTION
por: Wald, George
Publicado: (1938)

Nontransducing rhodopsin
Publicado: (1987)

Feedback from Rhodopsin controls rhodopsin exclusion in Drosophila photoreceptors
por: Vasiliauskas, Daniel, et al.
Publicado: (2011)

Open mic
por: CERN. Geneva
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_739kucff651l6qu6k1pak4vaqa