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Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)

PREMISE OF THE STUDY: Microsatellite markers were developed for Ilex kaushue (Aquifoliaceae), a medicinal plant with extremely small wild populations that exists in fragmented habitats, to assess and protect its genetic diversity. METHODS AND RESULTS: Using 454 GS FLX Titanium sequencing, 16 microsa...

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Autores principales: Qin, Lan-Fang, Qu, Xin-Cheng, Hu, Gang, Huang, Yun-Feng, Zhang, Qi-Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542944/
https://www.ncbi.nlm.nih.gov/pubmed/26312197
http://dx.doi.org/10.3732/apps.1500040
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author Qin, Lan-Fang
Qu, Xin-Cheng
Hu, Gang
Huang, Yun-Feng
Zhang, Qi-Wei
author_facet Qin, Lan-Fang
Qu, Xin-Cheng
Hu, Gang
Huang, Yun-Feng
Zhang, Qi-Wei
author_sort Qin, Lan-Fang
collection PubMed
description PREMISE OF THE STUDY: Microsatellite markers were developed for Ilex kaushue (Aquifoliaceae), a medicinal plant with extremely small wild populations that exists in fragmented habitats, to assess and protect its genetic diversity. METHODS AND RESULTS: Using 454 GS FLX Titanium sequencing, 16 microsatellite primer sets were isolated and characterized. Fifteen of these markers were polymorphic. The number of alleles per locus ranged from one to nine across 22 individuals from both cultivated and wild populations. The observed and expected heterozygosity in these two populations ranged from 0.000 to 1.000 and from 0.000 to 0.785, respectively. CONCLUSIONS: These markers will be useful in studies on genetic diversity of I. kaushue.
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spelling pubmed-45429442015-08-26 Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1) Qin, Lan-Fang Qu, Xin-Cheng Hu, Gang Huang, Yun-Feng Zhang, Qi-Wei Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite markers were developed for Ilex kaushue (Aquifoliaceae), a medicinal plant with extremely small wild populations that exists in fragmented habitats, to assess and protect its genetic diversity. METHODS AND RESULTS: Using 454 GS FLX Titanium sequencing, 16 microsatellite primer sets were isolated and characterized. Fifteen of these markers were polymorphic. The number of alleles per locus ranged from one to nine across 22 individuals from both cultivated and wild populations. The observed and expected heterozygosity in these two populations ranged from 0.000 to 1.000 and from 0.000 to 0.785, respectively. CONCLUSIONS: These markers will be useful in studies on genetic diversity of I. kaushue. Botanical Society of America 2015-08-10 /pmc/articles/PMC4542944/ /pubmed/26312197 http://dx.doi.org/10.3732/apps.1500040 Text en © 2015 Qin et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Qin, Lan-Fang
Qu, Xin-Cheng
Hu, Gang
Huang, Yun-Feng
Zhang, Qi-Wei
Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)
title Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)
title_full Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)
title_fullStr Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)
title_full_unstemmed Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)
title_short Development of microsatellite markers in Ilex kaushue (Aquifoliaceae), a medicinal plant species(1)
title_sort development of microsatellite markers in ilex kaushue (aquifoliaceae), a medicinal plant species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542944/
https://www.ncbi.nlm.nih.gov/pubmed/26312197
http://dx.doi.org/10.3732/apps.1500040
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