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A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations

BACKGROUND: The cascade computer model (CCM) was designed as a machine-learning feature platform for prediction of drug diffusivity from the mucoadhesive formulations. Three basic models (the statistical regression model, the K nearest neighbor model and the modified version of the back propagation...

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Autores principales: Lee, Yugyung, Khemka, Alok, Acharya, Gayathri, Giri, Namita, Lee, Chi H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545320/
https://www.ncbi.nlm.nih.gov/pubmed/26286552
http://dx.doi.org/10.1186/s12859-015-0684-z
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author Lee, Yugyung
Khemka, Alok
Acharya, Gayathri
Giri, Namita
Lee, Chi H.
author_facet Lee, Yugyung
Khemka, Alok
Acharya, Gayathri
Giri, Namita
Lee, Chi H.
author_sort Lee, Yugyung
collection PubMed
description BACKGROUND: The cascade computer model (CCM) was designed as a machine-learning feature platform for prediction of drug diffusivity from the mucoadhesive formulations. Three basic models (the statistical regression model, the K nearest neighbor model and the modified version of the back propagation neural network) in CCM operate sequentially in close collaboration with each other, employing the estimated value obtained from the afore-positioned base model as an input value to the next-positioned base model in the cascade. The effects of various parameters on the pharmacological efficacy of a female controlled drug delivery system (FcDDS) intended for prevention of women from HIV-1 infection were evaluated using an in vitro apparatus “Simulant Vaginal System” (SVS). We used computer simulations to explicitly examine the changes in drug diffusivity from FcDDS and determine the prognostic potency of each variable for in vivo prediction of formulation efficacy. The results obtained using the CCM approach were compared with those from individual multiple regression model. RESULTS: CCM significantly lowered the percentage mean error (PME) and enhanced r(2) values as compared with those from the multiple regression models. It was noted that CCM generated the PME value of 21.82 at 48169 epoch iterations, which is significantly improved from the PME value of 29.91 % at 118344 epochs by the back propagation network model. The results of this study indicated that the sequential ensemble of the classifiers allowed for an accurate prediction of the domain with significantly lowered variance and considerably reduces the time required for training phase. CONCLUSION: CCM is accurate, easy to operate, time and cost-effective, and thus, can serve as a valuable tool for prediction of drug diffusivity from mucoadhesive formulations. CCM may yield new insights into understanding how drugs are diffused from the carrier systems and exert their efficacies under various clinical conditions.
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spelling pubmed-45453202015-08-23 A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations Lee, Yugyung Khemka, Alok Acharya, Gayathri Giri, Namita Lee, Chi H. BMC Bioinformatics Research Article BACKGROUND: The cascade computer model (CCM) was designed as a machine-learning feature platform for prediction of drug diffusivity from the mucoadhesive formulations. Three basic models (the statistical regression model, the K nearest neighbor model and the modified version of the back propagation neural network) in CCM operate sequentially in close collaboration with each other, employing the estimated value obtained from the afore-positioned base model as an input value to the next-positioned base model in the cascade. The effects of various parameters on the pharmacological efficacy of a female controlled drug delivery system (FcDDS) intended for prevention of women from HIV-1 infection were evaluated using an in vitro apparatus “Simulant Vaginal System” (SVS). We used computer simulations to explicitly examine the changes in drug diffusivity from FcDDS and determine the prognostic potency of each variable for in vivo prediction of formulation efficacy. The results obtained using the CCM approach were compared with those from individual multiple regression model. RESULTS: CCM significantly lowered the percentage mean error (PME) and enhanced r(2) values as compared with those from the multiple regression models. It was noted that CCM generated the PME value of 21.82 at 48169 epoch iterations, which is significantly improved from the PME value of 29.91 % at 118344 epochs by the back propagation network model. The results of this study indicated that the sequential ensemble of the classifiers allowed for an accurate prediction of the domain with significantly lowered variance and considerably reduces the time required for training phase. CONCLUSION: CCM is accurate, easy to operate, time and cost-effective, and thus, can serve as a valuable tool for prediction of drug diffusivity from mucoadhesive formulations. CCM may yield new insights into understanding how drugs are diffused from the carrier systems and exert their efficacies under various clinical conditions. BioMed Central 2015-08-19 /pmc/articles/PMC4545320/ /pubmed/26286552 http://dx.doi.org/10.1186/s12859-015-0684-z Text en © Lee et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Lee, Yugyung
Khemka, Alok
Acharya, Gayathri
Giri, Namita
Lee, Chi H.
A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
title A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
title_full A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
title_fullStr A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
title_full_unstemmed A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
title_short A cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
title_sort cascade computer model for mocrobicide diffusivity from mucoadhesive formulations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545320/
https://www.ncbi.nlm.nih.gov/pubmed/26286552
http://dx.doi.org/10.1186/s12859-015-0684-z
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