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Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion
Locomotion is driven by shape changes coordinated by the nervous system through time; thus, enumerating an animal's complete repertoire of shape transitions would provide a basis for a comprehensive understanding of locomotor behaviour. Here we introduce a discrete representation of behaviour i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4546679/ https://www.ncbi.nlm.nih.gov/pubmed/26295152 http://dx.doi.org/10.1371/journal.pcbi.1004322 |
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author | Schwarz, Roland F. Branicky, Robyn Grundy, Laura J. Schafer, William R. Brown, André E. X. |
author_facet | Schwarz, Roland F. Branicky, Robyn Grundy, Laura J. Schafer, William R. Brown, André E. X. |
author_sort | Schwarz, Roland F. |
collection | PubMed |
description | Locomotion is driven by shape changes coordinated by the nervous system through time; thus, enumerating an animal's complete repertoire of shape transitions would provide a basis for a comprehensive understanding of locomotor behaviour. Here we introduce a discrete representation of behaviour in the nematode C. elegans. At each point in time, the worm’s posture is approximated by its closest matching template from a set of 90 postures and locomotion is represented as sequences of postures. The frequency distribution of postural sequences is heavy-tailed with a core of frequent behaviours and a much larger set of rarely used behaviours. Responses to optogenetic and environmental stimuli can be quantified as changes in postural syntax: worms show different preferences for different sequences of postures drawn from the same set of templates. A discrete representation of behaviour will enable the use of methods developed for other kinds of discrete data in bioinformatics and language processing to be harnessed for the study of behaviour. |
format | Online Article Text |
id | pubmed-4546679 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45466792015-09-01 Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion Schwarz, Roland F. Branicky, Robyn Grundy, Laura J. Schafer, William R. Brown, André E. X. PLoS Comput Biol Research Article Locomotion is driven by shape changes coordinated by the nervous system through time; thus, enumerating an animal's complete repertoire of shape transitions would provide a basis for a comprehensive understanding of locomotor behaviour. Here we introduce a discrete representation of behaviour in the nematode C. elegans. At each point in time, the worm’s posture is approximated by its closest matching template from a set of 90 postures and locomotion is represented as sequences of postures. The frequency distribution of postural sequences is heavy-tailed with a core of frequent behaviours and a much larger set of rarely used behaviours. Responses to optogenetic and environmental stimuli can be quantified as changes in postural syntax: worms show different preferences for different sequences of postures drawn from the same set of templates. A discrete representation of behaviour will enable the use of methods developed for other kinds of discrete data in bioinformatics and language processing to be harnessed for the study of behaviour. Public Library of Science 2015-08-21 /pmc/articles/PMC4546679/ /pubmed/26295152 http://dx.doi.org/10.1371/journal.pcbi.1004322 Text en © 2015 Schwarz et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Schwarz, Roland F. Branicky, Robyn Grundy, Laura J. Schafer, William R. Brown, André E. X. Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion |
title | Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion |
title_full | Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion |
title_fullStr | Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion |
title_full_unstemmed | Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion |
title_short | Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion |
title_sort | changes in postural syntax characterize sensory modulation and natural variation of c. elegans locomotion |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4546679/ https://www.ncbi.nlm.nih.gov/pubmed/26295152 http://dx.doi.org/10.1371/journal.pcbi.1004322 |
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